Remove estimate_severity API

NAMESPACE

@@ -29,7 +29,6 @@ export(calculate_parameter_estimates)
 export(create_sample_linelist)
 export(default_model)
 export(detection)
-export(estimate_severity)
 export(fit)
 export(has_detection)
 export(has_outcome)

NEWS.md

@@ -125,6 +125,7 @@ fit_result
 - Added `summary` generic for `SeverityEstimateFit` objects. [#30](https://github.com/ACCIDDA/SeverityEstimate/issues/30).
 - Added an integration-style notebook under `inst/notebooks/` for synthetic parameter-recovery checks, along with local render commands for heavier non-vignette R Markdown analyses. [#116](https://github.com/ACCIDDA/SeverityEstimate/issues/116).
 - Added `calculate_hazard` to get the underlying force of infection as a `data.frame` for diagnostics/additional analysis. [#9](https://github.com/ACCIDDA/SeverityEstimate/issues/9).
+- Removed the `estimate_severity` API. [#88](https://github.com/ACCIDDA/SeverityEstimate/issues/88).
 
 # SeverityEstimate 0.0.1
 

R/stanmodels.R

@@ -1,11 +1,10 @@
 # Generated by rstantools.  Do not edit by hand.
 
 # names of stan models
-stanmodels <- c("estimate_severity", "severity_estimate_by_surveillance")
+stanmodels <- c("estimate_severity")
 
 # load each stan module
 Rcpp::loadModule("stan_fit4estimate_severity_mod", what = TRUE)
-Rcpp::loadModule("stan_fit4severity_estimate_by_surveillance_mod", what = TRUE)
 
 # instantiate each stanmodel object
 stanmodels <- sapply(stanmodels, function(model_name) {