This repository contains all the pythonic file and data files required for performing ML mapping approach to predict the electric field gradient tensors from the Kohn-Sham Fock operator, density, and atomic orbital overlap matrices.
The tree of the files is as follows:
.
βββ 1_generate_data
βΒ Β βββ 1_Na
βΒ Β βΒ Β βββ Na_atomic_guess_density.npy
βΒ Β βΒ Β βββ Na_atomic_guess_ham.npy
βΒ Β βΒ Β βββ Na_atomic_guess_overlap.npy
βΒ Β βΒ Β βββ Na_ref_efg.npy
βΒ Β βΒ Β βββ Na_xtb_guess_density.npy
βΒ Β βΒ Β βββ Na_xtb_guess_ham.npy
βΒ Β βΒ Β βββ Na_xtb_guess_overlap.npy
βΒ Β βΒ Β βββ run_calc.py
βΒ Β βΒ Β βββ submit_template.slm
βΒ Β βΒ Β βββ xtb.inp
βΒ Β βββ 2_I
βΒ Β βΒ Β βββ I_atomic_guess_density.npy
βΒ Β βΒ Β βββ I_atomic_guess_ham.npy
βΒ Β βΒ Β βββ I_atomic_guess_overlap.npy
βΒ Β βΒ Β βββ I_ref_efg.npy
βΒ Β βΒ Β βββ I_xtb_guess_densities.npy
βΒ Β βΒ Β βββ I_xtb_guess_density.npy
βΒ Β βΒ Β βββ I_xtb_guess_ham.npy
βΒ Β βΒ Β βββ I_xtb_guess_hams.npy
βΒ Β βΒ Β βββ I_xtb_guess_overlap.npy
βΒ Β βΒ Β βββ I_xtb_guess_overlaps.npy
βΒ Β βΒ Β βββ run_calc.py
βΒ Β βΒ Β βββ submit_template.slm
βΒ Β βΒ Β βββ xtb.inp
βΒ Β βββ 3_Cs
βΒ Β βΒ Β βββ Cs_atomic_guess_density.npy
βΒ Β βΒ Β βββ Cs_atomic_guess_ham.npy
βΒ Β βΒ Β βββ Cs_atomic_guess_overlap.npy
βΒ Β βΒ Β βββ Cs_ref_efg.npy
βΒ Β βΒ Β βββ Cs_xtb_guess_density.npy
βΒ Β βΒ Β βββ Cs_xtb_guess_ham.npy
βΒ Β βΒ Β βββ Cs_xtb_guess_overlap.npy
βΒ Β βΒ Β βββ run_calc.py
βΒ Β βΒ Β βββ submit_template.slm
βΒ Β βΒ Β βββ xtb.inp
βΒ Β βββ extract_data.py
βββ 2_ml_mapping
βΒ Β βββ ml_mapping.ipynb
βββ 3_dynpy_calc
βΒ Β βββ compute_properties.py
βββ LICENSE
βββ README.md
6 directories, 38 files