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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 352 repositories
  • aind-units-nwb Public

    Code Ocean capsule to export ephys units data to NWB

    AllenNeuralDynamics/aind-units-nwb’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Mar 4, 2025
  • AllenNeuralDynamics/aind-beh-ephys-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 4, 2025
  • aind-ecephys-nwb Public

    Code Ocean capsule to create an NWB file for Neuropixels data

    AllenNeuralDynamics/aind-ecephys-nwb’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 4, 2025
  • aind-ephys-spikesort-spykingcircus2 Public

    CodeOcean capsule for ephys spike sorting with Spyking-CIRCUS 2

    AllenNeuralDynamics/aind-ephys-spikesort-spykingcircus2’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 4, 2025
  • aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    AllenNeuralDynamics/aind-ephys-pipeline’s past year of commit activity
    Nextflow 7 MIT 4 2 0 Updated Mar 4, 2025
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
    Python 3 MIT 0 15 (1 issue needs help) 2 Updated Mar 4, 2025
  • voxel Public

    General purpose microscope control repository

    AllenNeuralDynamics/voxel’s past year of commit activity
    Python 4 MIT 4 14 0 Updated Mar 4, 2025
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 25 MIT 17 51 9 Updated Mar 4, 2025
  • aind-qc-portal Public

    Quality control portal

    AllenNeuralDynamics/aind-qc-portal’s past year of commit activity
    Python 1 MIT 0 14 1 Updated Mar 4, 2025
  • AllenNeuralDynamics/dynamic-routing-unit-drift-qc-dashboard’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 4, 2025