All pull requests

Pull requests

• feat(grzctl): add report monitoring for the GDC monitoring dashboard

  type: enhancement
  #741·okohlbacher opened Oct 29, 2026Collaborator·

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  11

• chore(release): release main

  autorelease: pending
  #740·MVHBot opened Oct 27, 2026Contributor·

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• feat(grz-common,grz-db,grzctl): Record the version of grz-cli used by the LE into the database

  #738·zhenseler opened Oct 26, 2026Collaborator·

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  1

  8

• fix(grz-cli,grzctl): require grz-common 4.1 and grz-db 4.1

  #733·tedil opened Oct 19, 2026Collaborator·8/8·

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  2

• feat(grz-common): localCaseID metadata check

  #732·zhenseler opened Oct 13, 2026Collaborator·

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  1

  6

• refactor(grz-common,grz-cli,grzctl): share one OrderedGroup from grz_common.cli

  #730·tedil opened Oct 13, 2026Collaborator·7/8·

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  3

• feat(grz-db): decide the detailed QC selection under a lock

  #729·tedil opened Oct 13, 2026Collaborator·5/8·

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  2

• feat(grzctl): add shell completion

  #727·tedil opened Oct 13, 2026Collaborator·

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  2

• fix(grzctl)!: match config env vars only by full path and in the case of the config keys

  #721·tedil opened Oct 9, 2026Collaborator·

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  4

• feat(grz-db,grz-common,grzctl): reject duplicate tanG and initial submissions with a previously used localCaseId before download

  #719·virag-compbio opened Oct 8, 2026Collaborator·

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  8

• feat(grzctl): export archived metadata.json files as an encrypted zip

  #717·jblesch opened Oct 6, 2026Collaborator·

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  1

  15

• feat(grz-common,grzctl): set a configurable mode on the local submission directories

  #704·Hoeze opened Sep 30, 2026Collaborator·

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• feat(grz-common): add a streaming pipeline with crypt4gh transforms and progress tracking

  #700·Hoeze opened Sep 27, 2026Collaborator·1/8·

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  3

• feat(grzctl)!: add the streaming process command and detailed QC selection

  #686·tedil opened Sep 21, 2026Collaborator·6/8·

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  70

• feat(grz-common,grzctl): record every failed file of a streamed submission

  #685·tedil opened Sep 21, 2026Collaborator·4/8·

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  15

• feat(grz-common,grzctl): verify S3 uploads with Content-MD5 and ETags, and move S3 transfers to pipeline stages

  #684·tedil opened Sep 21, 2026Collaborator·3/8·

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  30

• feat(grz-common,grz-check): add streaming FASTQ, BAM and checksum validators that run grz-check

  #683·tedil opened Sep 21, 2026Collaborator·2/8·

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  23

• feat(grz-db, grzctl): record a failed download under its own reason

  #657·Hoeze opened Aug 20, 2026Collaborator·

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• feat(grz-common): *.gz magic byte check #455

  #634·zhenseler opened Jul 14, 2026Collaborator·

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  6

  

• feat(grzctl,grz-cli): add grzctl report status and grz-cli report pull

  #591·tedil opened Jun 2, 2026Collaborator·

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  4

• feat(grz-cli,grzctl,grz-common): parallelize validate, encrypt, upload, download + progress

  #579·tedil opened May 15, 2026Collaborator·

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• chore(repo): Update README.md

  #500·Hoeze opened Jan 30, 2026Collaborator·

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• fix(grz-pydantic-models): Return all-zero thresholds for non-index patients

  #499·Hoeze opened Jan 30, 2026Collaborator·

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  1

  2

• docs(grz-cli): move to GitHub pages

  #434·twrightsman opened Oct 22, 2025Collaborator·

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  1

  5

  

• feat(repo): Add grz-watchdog

  #389·tedil opened Sep 22, 2025Collaborator·

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  21