Sync issues to Airtable

Workflow runs for Sync issues to Airtable

• ESMFold2: fold(lm_dropout=0) does not turn the LM dropout off

  completed successfully:
  Sync issues to Airtable#89:Issue#418closedbyfaustomilletari
  Oct 14, 202619s
  More actions for workflow run 89

• Questions on design constraints: penalizing multi-residue motifs and suppressing interface beta-sheets

  completed successfully:
  Sync issues to Airtable#88:Issue#408closedbyGu-SeongHoe
  Oct 14, 202612s
  More actions for workflow run 88

• can not use ESMFold2-Fast

  completed successfully:
  Sync issues to Airtable#87:Issue#422openedbyCharlesDDD
  Oct 5, 202622s
  More actions for workflow run 87

• ESMFold2: SMILES ligands are written as LIG, which is a different molecule in the CCD

  completed successfully:
  Sync issues to Airtable#86:Issue#421editedbydaylight-00
  Oct 2, 202615s
  More actions for workflow run 86

• ESMFold2: SMILES ligands are written as LIG, which is a different molecule in the CCD

  completed successfully:
  Sync issues to Airtable#85:Issue#421openedbydaylight-00
  Oct 2, 202612s
  More actions for workflow run 85

• ESMFold2: fold() cannot take precomputed LM hidden states

  completed successfully:
  Sync issues to Airtable#84:Issue#420openedbydaylight-00
  Oct 2, 202614s
  More actions for workflow run 84

• ESMFold2: a ligand given as several CCD codes is returned as one residue

  completed successfully:
  Sync issues to Airtable#83:Issue#419openedbydaylight-00
  Oct 2, 202612s
  More actions for workflow run 83

• ESMFold2: fold(lm_dropout=0) does not turn the LM dropout off

  completed successfully:
  Sync issues to Airtable#82:Issue#418openedbydaylight-00
  Oct 2, 202614s
  More actions for workflow run 82

• PocketConditioning not exported

  completed successfully:
  Sync issues to Airtable#81:Issue#413closedbyfaustomilletari
  Sep 25, 202621s
  More actions for workflow run 81

• PocketConditioning not exported

  completed successfully:
  Sync issues to Airtable#80:Issue#413editedbyEricDeveaud
  Sep 25, 202612s
  More actions for workflow run 80

• PocketConditioning not exported

  completed successfully:
  Sync issues to Airtable#79:Issue#413openedbyEricDeveaud
  Sep 25, 202612s
  More actions for workflow run 79

• Does the HuggingFace checkpoint biohub/ESMFold2-Experimental-Fast correspond to the model the ESMFold2 paper calls ESMFold2-Experimental-Fast-cutoff2021?

  completed successfully:
  Sync issues to Airtable#78:Issue#411openedbyekiefl
  Sep 22, 202613s
  More actions for workflow run 78

• Questions on design constraints: penalizing multi-residue motifs and suppressing interface beta-sheets

  completed successfully:
  Sync issues to Airtable#77:Issue#408openedbyGu-SeongHoe
  Sep 21, 202613s
  More actions for workflow run 77

• Clarification on ESMFold2 training cutoff: deposition date vs. PDB release date, and possible benchmark leakage

  completed successfully:
  Sync issues to Airtable#76:Issue#406openedbySanggeunParrk
  Sep 18, 202615s
  More actions for workflow run 76

• ESMC-6B main loads as uninitialized weights via the transformers ESMC classes

  completed successfully:
  Sync issues to Airtable#75:Issue#405closedbyfaustomilletari
  Sep 16, 202617s
  More actions for workflow run 75

• ESMC-6B main loads as uninitialized weights via the transformers ESMC classes

  completed successfully:
  Sync issues to Airtable#74:Issue#405openedbyekiefl
  Sep 16, 202615s
  More actions for workflow run 74

• Testing agent

  completed successfully:
  Sync issues to Airtable#73:Issue#403closedbyfaustomilletari
  Sep 10, 202611s
  More actions for workflow run 73

• Testing agent

  completed successfully:
  Sync issues to Airtable#72:Issue#403openedbyfaustomilletari
  Sep 10, 202610s
  More actions for workflow run 72

• Testing automation

  completed successfully:
  Sync issues to Airtable#71:Issue#402closedbyfaustomilletari
  Sep 10, 20269s
  More actions for workflow run 71

• Testing automation

  completed successfully:
  Sync issues to Airtable#70:Issue#402openedbyfaustomilletari
  Sep 10, 20269s
  More actions for workflow run 70

• Testing automation

  completed successfully:
  Sync issues to Airtable#69:Issue#401closedbyfaustomilletari
  Sep 10, 20268s
  More actions for workflow run 69

• Testing automation

  completed successfully:
  Sync issues to Airtable#68:Issue#401reopenedbyfaustomilletari
  Sep 10, 202622s
  More actions for workflow run 68

• Testing automation

  completed successfully:
  Sync issues to Airtable#67:Issue#401closedbyfaustomilletari
  Sep 10, 202611s
  More actions for workflow run 67

• Testing automation

  completed successfully:
  Sync issues to Airtable#66:Issue#401openedbyfaustomilletari
  Sep 10, 202614s
  More actions for workflow run 66

• Issue with CCD code string parsing when code starts with a digit (e.g., "29N" parsed as "2")

  completed successfully:
  Sync issues to Airtable#65:Issue#400closedbyfaustomilletari
  Sep 10, 202615s
  More actions for workflow run 65