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@BoevaLab

Boeva Lab, ETH Zurich

Computational (Epi-)genetics of Cancer

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  1. FREEC FREEC Public

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    C++ 159 50

  2. ONCOCNV ONCOCNV Public

    ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

    R 25 12

  3. LILY LILY Public

    Detection of super-enhancers in cancer data

    R 21 9

  4. CancerFoundation CancerFoundation Public

    CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

    Jupyter Notebook 17 2

  5. ANS_signature_scoring ANS_signature_scoring Public

    ANS_signature_scoring: A gene expression signature scoring Python package.

    Python 15 2

  6. SV-Bay SV-Bay Public

    Detection of structural variants in cancer mate-pair and paired-end data

    Python 12 2

Repositories

Showing 10 of 39 repositories
  • allele-specific-atac Public

    Early feature extraction determines performance: systematic evaluation of deep learning models for high-resolution chromatin accessibility prediction

    BoevaLab/allele-specific-atac’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 17, 2025
  • CancerFoundation Public

    CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

    BoevaLab/CancerFoundation’s past year of commit activity
    Jupyter Notebook 17 MIT 2 0 0 Updated Apr 16, 2025
  • GWAS-power Public
    BoevaLab/GWAS-power’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 14, 2025
  • ANS_signature_scoring Public

    ANS_signature_scoring: A gene expression signature scoring Python package.

    BoevaLab/ANS_signature_scoring’s past year of commit activity
    Python 15 MIT 2 0 0 Updated Apr 11, 2025
  • UniversalEPI Public

    UniversalEPI: Harnessing Attention Mechanisms to Decode Chromatin Interactions in Rare and Unexplored Cell Types

    BoevaLab/UniversalEPI’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Apr 3, 2025
  • MTRNA-sc-cancer Public

    Repository containing all the code necessary for reproducing the paper "Filtering cells with high mitochondrial content removes viable metabolically altered malignant cell populations in cancer single-cell studies" (Yates, Kraft, and Boeva)

    BoevaLab/MTRNA-sc-cancer’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 18, 2025
  • BoevaLab/ANS_supplementary_information’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 26, 2025
  • CanSig-benchmark Public

    CanSig: a package to compare methods for discovering shared transcriptional states in cancer.

    BoevaLab/CanSig-benchmark’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 29, 2025
  • BoevaLab/single-cell-transformer-papers’s past year of commit activity
    HTML 0 38 0 0 Updated Dec 19, 2024
  • scAugmentBench Public

    Benchmarking Self-Supervised Learning for Single-Cell Data

    BoevaLab/scAugmentBench’s past year of commit activity
    Python 5 0 0 0 Updated Oct 28, 2024

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