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@BrainCircuitsIO

BrainCircuits.io

Platform, App and API for Large-Scale Connectomics

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  1. circuitmap circuitmap Public

    Django application serving data for synapse-guided circuit mapping in CATMAID

    Python 3 2

  2. arbor arbor Public

    Forked from clbarnes/arbor

    A python implementation of (some of) Arbor.js and related tools

    Python

  3. fafbseg-py fafbseg-py Public

    Forked from navis-org/fafbseg-py

    Tools to work with manual and auto-segmented data in FAFB

    Python

  4. CloudVolumeServer CloudVolumeServer Public

    Forked from flyconnectome/CloudVolumeServer

    Flask application to serve data via CloudVolume

    Python

  5. pymaid pymaid Public

    Forked from navis-org/pymaid

    Collection of Python 3 tools to work with neuron data from CATMAID servers

    Python

  6. catpy catpy Public

    Forked from catmaid/catpy

    Python client for the CATMAID API

    Python

Repositories

Showing 10 of 21 repositories
  • neuroglancer-demo Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    BrainCircuitsIO/neuroglancer-demo’s past year of commit activity
    TypeScript 0 Apache-2.0 327 0 0 Updated Mar 10, 2025
  • bcio-articles Public
    BrainCircuitsIO/bcio-articles’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jan 5, 2024
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    BrainCircuitsIO/neuroglancer’s past year of commit activity
    TypeScript 0 Apache-2.0 327 0 0 Updated Dec 1, 2023
  • navis Public Forked from navis-org/navis

    Python library for analysis of neuroanatomical data.

    BrainCircuitsIO/navis’s past year of commit activity
    Python 0 GPL-3.0 34 0 0 Updated Oct 16, 2023
  • bcio-discussion Public

    Discussion about regions, cell types, papers etc.

    BrainCircuitsIO/bcio-discussion’s past year of commit activity
    0 0 0 0 Updated May 31, 2023
  • workspace Public
    BrainCircuitsIO/workspace’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 23, 2023
  • pytorch-3dunet Public Forked from wolny/pytorch-3dunet

    3D U-Net model for volumetric semantic segmentation written in pytorch

    BrainCircuitsIO/pytorch-3dunet’s past year of commit activity
    Jupyter Notebook 0 MIT 526 0 0 Updated May 11, 2023
  • napari Public Forked from napari/napari

    napari: a fast, interactive, multi-dimensional image viewer for python

    BrainCircuitsIO/napari’s past year of commit activity
    Python 0 BSD-3-Clause 441 0 0 Updated May 11, 2023
  • connectomics-vis-survey.github.io Public Forked from connectomics-vis-survey/connectomics-vis-survey.github.io

    Resources for the EuroVis 2022 survey paper on Visualization and Analysis in High-Resolutiuon Connectomics

    BrainCircuitsIO/connectomics-vis-survey.github.io’s past year of commit activity
    JavaScript 0 2 0 0 Updated Jun 8, 2022
  • neuroglancer-json-schemas Public Forked from janelia-cellmap/pydantic-neuroglancer

    JSON Schemas for neuroglancer data structures

    BrainCircuitsIO/neuroglancer-json-schemas’s past year of commit activity
    Python 0 1 0 0 Updated Feb 16, 2022
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