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Workgraph dummy helper submission script #232

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Workgraph dummy helper submission script #232

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14 changes: 14 additions & 0 deletions src/sirocco/workgraph.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@
from aiida_icon.calculations import IconCalculation
from aiida_shell.parsers.shell import ShellParser
from aiida_workgraph import WorkGraph, Task
import textwrap

from sirocco import core
from sirocco.core.graph_items import GeneratedData
Expand Down Expand Up @@ -322,9 +323,22 @@ def _create_icon_task_node(self, task: core.IconTask):
options.update(self._from_task_get_scheduler_options(task))
options["additional_retrieve_list"] = []
options["account"] = "cwd01"
options["append_text"] = textwrap.dedent("""
# Create intermediate file
cat > _intermediate.sh << 'EOF'
#!/bin/bash -l
# 10 min (longer than walltime)
sleep 600
EOF

# Submit next job as dependency, running for 2 mins
sbatch --job-name=intermediate --time=00:02:00 --nodes=$SLURM_JOB_NUM_NODES --ntasks-per-node=$SLURM_NTASKS_PER_NODE --account=$SLURM_JOB_ACCOUNT --dependency=afterany:$SLURM_JOB_ID _intermediate.sh
""")

metadata["options"] = options

builder.metadata = metadata
("metadata.options.append_text",)

self._aiida_task_nodes[task_label] = self._workgraph.add_task(
builder, name=task_label
Expand Down
4 changes: 2 additions & 2 deletions tests/cases/APE_R02B04/config/config.yml
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Expand Up @@ -47,7 +47,7 @@ tasks:
plugin: icon
computer: santis-firecrest
uenv: icon/25.2:v3
nodes: 1
nodes: 2
ntasks_per_node: 4
cpus_per_task: 72
bin: /capstor/store/cscs/userlab/cwd01/leclairm/archive_icon_build/icon-nwp_cpu_25.2-v3/bin/icon
Expand All @@ -58,7 +58,7 @@ tasks:
plugin: shell
computer: santis-firecrest
uenv: icon/25.2:v3
nodes: 1
nodes: 2
ntasks_per_node: 4
cpus_per_task: 72
path: scripts/cleanup.py
Expand Down
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