PTM-compass v1.3

Date 📅 2025_02

Changes in detail

• PeakSelector:
  • Fixed a bug in the 'PeakSelector' related to the bin width.
  • Duplicate bin params in config

Full Changelog: 1.2...1.3

PTM-compass v1.2

DATE: 2024_12

Highlights

• PDMTableMaker is executed using Experiment column.

• The 'FreqProcessor' has been added.

Changes in detail

• PDMTableMaker is executed using Experiment column.

• The 'FreqProcessor' has been added to replace the old 'PGM_Processor' program. It extracts the PGM and PDM frequencies.

Full Changelog: 1.1...1.2

PTM-compass v1.1

DATE: 2024_11

Highlights

• Fix a bug: Local FDR calculation for orphan PSMs

Changes in detail

• PeakFDRer: Fixing a bug. The Local FDR calculation for orphan PSMs.

Full Changelog: 1.0...1.1

PTM-compass v1.0

DATE: 2024_11

Highlights

• The term 'Experiment' has been replaced with 'Batch' throughout the workflow.

• All programs now utilize a unified configuration file.

• A revamped file structure has been introduced.

Changes in detail

• PeakFDRer: use an updated 'experimental_table' that includes the columns 'Experiment','Batch' and 'Spectrum_File'. The FDR calculation is based on the information in the 'Batch' column.

Full Changelog: https://github.com/CNIC-Proteomics/PTM-compass/commits/1.0