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iSanXoT-0.4.4
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@jmrodriguezc jmrodriguezc released this 28 Feb 16:19
· 212 commits to master since this release
0.4.4
e86ce78 
DATE: 2022_02

Highlights

  • PROTEIN_ASSIGNER is the new Module for CNIC Adaptors.

  • The REPORT module can retrieve the X'inf and Winf from the _lowerNormW files.

Changes in the Graphical User Interface

  • We have included more details in the short description for the SBT module and RATIOS module.

  • Create general adaptors for the search engines: Proteome Discoverer, MSFragger, Comet and MaxQuant.

  • Fixing a minor problem loading the adaptors.

  • PROTEIN_ASSIGNER is the new Module for CNIC Adaptors.

Changes in the Code Workflow

  • Minor changes: changes the descrioption of ratios command.

  • Now, the modules of adaptors are independent.

  • TABLE2CFG: fixing a problem with the unique function. We want the unique list bbut without sort.

  • General Adaptors for Proteome Discoverer, MSFragger, Comet, and MaxQuant:

    • These adaptors only create the columns: Experiment, Scan_Id, and Peptide_Id.
    • The calculation of Peptide_Id is without the DeltaMass forgetting the unimod file.

  • CNIC Specific Adaptors:

    • These adaptors have the FDR calculation including the cXCorr (for PD).
    • There is a new Module for CNIC Adaptors: ProteinAssigner

  • KLIBRATE: When the number of cycles in calibrate is exceeded, we can use k=600, var=0.04 by default. This is based on the values from PESA project:

  • REPORT:
    • Bug fixed: the program does not retrieve the Xsup value.
    • The program can retrieve the X'inf and Winf from the _lowerNormW files.
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