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@setten setten commented Oct 17, 2017

here are some of my suggestion, please have a look at the comments and commit messages.

it's probably best to merge this in a separate branch for testing before merging into master.

Michiel van Setten added 5 commits October 17, 2017 09:34
1 produce an intermediate file using the current code
2 save the file in test_files
3 switch of saving the reference file
4 from now on test if the code still reproduces the reference fiel
5 optimize the code but keep running the test in between to test if the resutls stay the same.

some optimization almost everywhere the outputfile is opened again and again in the inner loop, although it is already open.
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