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Elastic_Net_analysis

#Carolyn McNabb 2021 #[email protected]

In this repository, you will find data, scripts and output files needed to reproduce findings reported in our 2020 paper: Carolyn B. McNabb, Laura G. Burgess, Amy Fancourt, Nancy Mulligan, Lily FitzGibbon, Patricia Riddell, Kou Murayama. No evidence for a relationship between social closeness and similarity in resting-state functional brain connectivity in schoolchildren. Scientific Reports (2020). https://doi.org/10.1038/s41598-020-67718-8

YOU WILL NEED R AND MATLAB TO RUN THE SCRIPTS R version 4.0.1 (2020-06-06) -- "See Things Now" AND MATLAB 2015b should work. PLEASE READ THE COMMENTS IN THE SCRIPTS CAREFULLY - THESE CONTAIN VALUABLE INFORMATION TO HELP YOU SAVE TIME AND GET WHAT YOU WANT OUT OF THE DATA. YOU MAY NEED TO INSTALL SOME LIBRARIES IN R OR LOAD LIBRARIES THAT ARE COMMENTED OUT.

Scripts need to be run in the following order:

  1. a1_correlations_for_rsfMRI (MATLAB)

  2. a2_correlations_for_RSNs (MATLAB)

  3. a3_modules_per_brain (MATLAB)

  4. s1_CM_socialnetwork_analysis (R)

  5. s2_comm_similarities (MATLAB)

  6. s3_SN_fMRI_looped_mutual_ties (R)

  7. s4_prediction_modelling (MATLAB)

  8. s5_elastic_find_best_alpha (R)

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