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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| #!/bin/sh | ||
| curl -fsLO https://raw.githubusercontent.com/scijava/scijava-scripts/main/ci-build.sh | ||
| sh ci-build.sh |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| #!/bin/sh | ||
| curl -fsLO https://raw.githubusercontent.com/scijava/scijava-scripts/main/ci-setup-github-actions.sh | ||
| sh ci-setup-github-actions.sh |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| name: build | ||
|
|
||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| tags: | ||
| - "*-[0-9]+.*" | ||
| pull_request: | ||
| branches: | ||
| - master | ||
|
|
||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Set up Java | ||
| uses: actions/setup-java@v3 | ||
| with: | ||
| java-version: '8' | ||
| distribution: 'zulu' | ||
| cache: 'maven' | ||
| - name: Set up CI environment | ||
| run: .github/setup.sh | ||
| - name: Execute the build | ||
| run: .github/build.sh | ||
| env: | ||
| GPG_KEY_NAME: ${{ secrets.GPG_KEY_NAME }} | ||
| GPG_PASSPHRASE: ${{ secrets.GPG_PASSPHRASE }} | ||
| MAVEN_USER: ${{ secrets.MAVEN_USER }} | ||
| MAVEN_PASS: ${{ secrets.MAVEN_PASS }} | ||
| OSSRH_PASS: ${{ secrets.OSSRH_PASS }} | ||
| SIGNING_ASC: ${{ secrets.SIGNING_ASC }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,5 @@ | ||
| <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> | ||
| <modelVersion>4.0.0</modelVersion> | ||
|
|
||
| <parent> | ||
|
|
@@ -11,16 +12,14 @@ | |
| <artifactId>CTC-measures</artifactId> | ||
| <version>1.0.2-SNAPSHOT</version> | ||
|
|
||
| <organization> | ||
| <name>The Cell Tracking Challenge</name> | ||
| <url>http://celltrackingchallenge.net</url> | ||
| </organization> | ||
|
|
||
| <name>Cell Tracking Challenge -- Java Measures</name> | ||
| <description>Java implementation of measures for quantitative evaluation of biomedical tracking in general.</description> | ||
| <url>https://github.com/CellTrackingChallenge/measures</url> | ||
| <inceptionYear>2017</inceptionYear> | ||
|
|
||
| <organization> | ||
| <name>The Cell Tracking Challenge</name> | ||
| <url>http://celltrackingchallenge.net</url> | ||
| </organization> | ||
| <licenses> | ||
| <license> | ||
| <name>Simplified BSD</name> | ||
|
|
@@ -45,7 +44,6 @@ | |
| </roles> | ||
| </developer> | ||
| </developers> | ||
|
|
||
| <contributors> | ||
| <contributor> | ||
| <name>None</name> | ||
|
|
@@ -54,38 +52,72 @@ | |
|
|
||
| <mailingLists> | ||
| <mailingList> | ||
| <name>ImageJ Forum</name> | ||
| <archive>http://forum.imagej.net/</archive> | ||
| <name>Image.sc Forum</name> | ||
| <archive>https://forum.image.sc/</archive> | ||
| </mailingList> | ||
| </mailingLists> | ||
|
|
||
| <!-- ====================================== --> | ||
|
|
||
| <scm> | ||
| <connection>scm:git:https://github.com/CellTrackingChallenge/measures</connection> | ||
| <developerConnection>scm:git:[email protected]:CellTrackingChallenge/measures</developerConnection> | ||
| <tag>HEAD</tag> | ||
| <url>https://github.com/CellTrackingChallenge/measures</url> | ||
| </scm> | ||
| <issueManagement> | ||
| <system>GitHub Issues</system> | ||
| <url>http://github.com/CellTrackingChallenge/measures/issues</url> | ||
| <url>https://github.com/CellTrackingChallenge/measures/issues</url> | ||
| </issueManagement> | ||
| <ciManagement> | ||
| <system>none</system> | ||
| </ciManagement> | ||
|
|
||
| <distributionManagement> | ||
| <properties> | ||
| <package-name>net.celltrackingchallenge.measures</package-name> | ||
|
|
||
| <license.licenseName>BSD 2-Clause</license.licenseName> | ||
| <license.projectName>CTC-measures</license.projectName> | ||
| <license.organizationName>Cell Tracking Challenge</license.organizationName> | ||
| <license.copyrightOwners>xulman</license.copyrightOwners> | ||
|
|
||
| <!-- NB: Deploy releases to the SciJava Maven repository. --> | ||
| <releaseProfiles>sign,deploy-to-scijava</releaseProfiles> | ||
| </properties> | ||
|
|
||
| <dependencies> | ||
| <!-- for reading/saving images --> | ||
| <dependency> | ||
| <groupId>sc.fiji</groupId> | ||
| <artifactId>simplified-io</artifactId> | ||
| <version>1.0.1</version> | ||
| <exclusions> | ||
| <exclusion> | ||
| <groupId>xalan</groupId> | ||
| <artifactId>xalan</artifactId> | ||
| </exclusion> | ||
| </exclusions> | ||
| </dependency> | ||
|
|
||
| <!-- for meshes --> | ||
| <dependency> | ||
| <groupId>net.imagej</groupId> | ||
| <artifactId>imagej-ops</artifactId> | ||
| </dependency> | ||
| </dependencies> | ||
|
|
||
| <repositories> | ||
| <repository> | ||
| <id>it4i</id> | ||
| <url>https://artifactory.cs.vsb.cz/it4i/</url> | ||
| <id>scijava.public</id> | ||
| <url>https://maven.scijava.org/content/groups/public</url> | ||
| </repository> | ||
| </distributionManagement> | ||
| </repositories> | ||
|
|
||
| <!-- to introduce Vlado's favourite COMMITrev file into the released .jar files --> | ||
| <build> | ||
| <plugins> | ||
| <plugin> | ||
| <groupId>pl.project13.maven</groupId> | ||
| <artifactId>git-commit-id-plugin</artifactId> | ||
| <version>2.2.4</version> | ||
| <version>4.9.10</version> | ||
| <executions> | ||
| <execution> | ||
| <phase>validate</phase> | ||
|
|
@@ -105,90 +137,25 @@ | |
| </configuration> | ||
| </plugin> | ||
| <plugin> | ||
| <groupId>org.codehaus.mojo</groupId> | ||
| <artifactId>exec-maven-plugin</artifactId> | ||
| <groupId>org.apache.maven.plugins</groupId> | ||
| <artifactId>maven-antrun-plugin</artifactId> | ||
| <executions> | ||
| <execution> | ||
| <phase>generate-sources</phase> | ||
| <goals> | ||
| <goal>exec</goal> | ||
| <goal>run</goal> | ||
| </goals> | ||
| </execution> | ||
| </executions> | ||
| <configuration> | ||
| <executable>sh</executable> | ||
| <arguments> | ||
| <argument>-c</argument> | ||
| <argument>rm -v '${project.build.outputDirectory}'/COMMITrev_*; touch '${project.build.outputDirectory}'/COMMITrev_${git.commit.id.abbrev}_${project.artifactId};</argument> | ||
| </arguments> | ||
| <target> | ||
| <!-- make sure no COMMITrev tag files are floating around from some previous runs --> | ||
| <!-- NB: this task is redundant whenever 'mvn clean' is executed... --> | ||
| <delete><fileset dir="${project.build.outputDirectory}" includes="COMMITrev_*"/></delete> | ||
| <touch file="${project.build.outputDirectory}/COMMITrev_${git.commit.id.abbrev}_${project.artifactId}"/> | ||
| </target> | ||
| </configuration> | ||
| </plugin> | ||
| <plugin> | ||
| <artifactId>maven-assembly-plugin</artifactId> | ||
| <version>3.3.0</version> | ||
| <configuration> | ||
| <descriptorRefs> | ||
| <descriptorRef>jar-with-dependencies</descriptorRef> | ||
| </descriptorRefs> | ||
| <archive> | ||
| <manifest> | ||
| <mainClass>net.celltrackingchallenge.measures.util.BgMaskCreator</mainClass> | ||
| </manifest> | ||
| </archive> | ||
| </configuration> | ||
| <executions> | ||
| <execution> | ||
| <id>make-assembly</id> | ||
| <phase>package</phase> | ||
| <goals> | ||
| <goal>single</goal> | ||
| </goals> | ||
| </execution> | ||
| </executions> | ||
| </plugin> | ||
| </plugins> | ||
| </build> | ||
|
|
||
| <packaging>jar</packaging> | ||
|
|
||
| <!-- ====================================== --> | ||
|
|
||
| <properties> | ||
| <package-name>net.celltrackingchallenge.measures</package-name> | ||
|
|
||
| <license.licenseName>BSD 2-Clause</license.licenseName> | ||
| <license.projectName>CTC-measures</license.projectName> | ||
| <license.organizationName>Cell Tracking Challenge</license.organizationName> | ||
| <license.copyrightOwners>xulman</license.copyrightOwners> | ||
| </properties> | ||
|
|
||
| <repositories> | ||
| <repository> | ||
| <id>scijava.public</id> | ||
| <url>https://maven.scijava.org/content/groups/public</url> | ||
| </repository> | ||
| </repositories> | ||
|
|
||
| <dependencies> | ||
| <!-- for reading/saving images --> | ||
| <dependency> | ||
| <groupId>sc.fiji</groupId> | ||
| <artifactId>simplified-io</artifactId> | ||
| <version>1.0.1</version> | ||
|
|
||
| <exclusions> | ||
| <exclusion> | ||
| <groupId>xalan</groupId> | ||
| <artifactId>xalan</artifactId> | ||
| </exclusion> | ||
| </exclusions> | ||
| </dependency> | ||
|
|
||
| <!-- for meshes --> | ||
| <dependency> | ||
| <groupId>net.imagej</groupId> | ||
| <artifactId>imagej-ops</artifactId> | ||
| <version>${imagej-ops.version}</version> | ||
| </dependency> | ||
| </dependencies> | ||
| </project> | ||