Bump the minor_and_patch group across 1 directory with 6 updates

[dependabot]

Bumps the minor_and_patch group with 6 updates in the / directory:

Package	From	To
numpy	2.1.3	2.2.3
scipy	1.14.1	1.15.2
matplotlib	3.9.3	3.10.0
pylint	3.3.2	3.3.4
mypy	1.13.0	1.15.0
sphinx-autoapi	3.4.0	3.6.0

Updates numpy from 2.1.3 to 2.2.3

Release notes

Sourced from numpy's releases.

2.2.3 (Feb 13, 2025)

NumPy 2.2.3 Release Notes

NumPy 2.2.3 is a patch release that fixes bugs found after the 2.2.2 release. The majority of the changes are typing improvements and fixes for free threaded Python. Both of those areas are still under development, so if you discover new problems, please report them.

This release supports Python versions 3.10-3.13.

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• !amotzop
• Charles Harris
• Chris Sidebottom
• Joren Hammudoglu
• Matthew Brett
• Nathan Goldbaum
• Raghuveer Devulapalli
• Sebastian Berg
• Yakov Danishevsky +

Pull requests merged

A total of 21 pull requests were merged for this release.

• #28185: MAINT: Prepare 2.2.x for further development
• #28201: BUG: fix data race in a more minimal way on stable branch
• #28208: BUG: Fix from_float_positional errors for huge pads
• #28209: BUG: fix data race in np.repeat
• #28212: MAINT: Use VQSORT_COMPILER_COMPATIBLE to determine if we should...
• #28224: MAINT: update highway to latest
• #28236: BUG: Add cpp atomic support (#28234)
• #28237: BLD: Compile fix for clang-cl on WoA
• #28243: TYP: Avoid upcasting float64 in the set-ops
• #28249: BLD: better fix for clang / ARM compiles
• #28266: TYP: Fix timedelta64.__divmod__ and timedelta64.__mod__...
• #28274: TYP: Fixed missing typing information of set_printoptions
• #28278: BUG: backport resource cleanup bugfix from gh-28273
• #28282: BUG: fix incorrect bytes to stringdtype coercion
• #28283: TYP: Fix scalar constructors
• #28284: TYP: stub numpy.matlib
• #28285: TYP: stub the missing numpy.testing modules
• #28286: CI: Fix the github label for TYP: PR's and issues
• #28305: TYP: Backport typing updates from main
• #28321: BUG: fix race initializing legacy dtype casts
• #28324: CI: update test_moderately_small_alpha

... (truncated)

Commits

• a274561 Merge pull request #28322 from charris/prepare-2.2.3
• 5ab0f71 REL: Prepare for the NumPy 2.2.3 release [wheel build]
• 010ad9b Merge pull request #28324 from charris/update-test_dirichlet_moderately_small...
• 6338746 CI: update test_moderately_small_alpha [wheel build]
• 56f8d5b Merge pull request #28321 from charris/backport-28290
• 48515a3 MAINT: Update some testing files from main
• 96ca7e3 MAINT: respond to code review
• c20ac88 MAINT: use a try/finally to make the deadlock protection more robust
• d494647 MAINT: fix indentation and clarify comment
• 3f8fbd6 MAINT: go back to try/except
• Additional commits viewable in compare view

Updates scipy from 1.14.1 to 1.15.2

Release notes

Sourced from scipy's releases.

SciPy 1.15.2 Release Notes

SciPy 1.15.2 is a bug-fix release with no new features compared to 1.15.1. Free-threaded Python 3.13 wheels for Linux ARM platform are available on PyPI starting with this release.

Authors

• Name (commits)
• Peter Bell (1)
• Charles Bousseau (1) +
• Jake Bowhay (3)
• Matthew Brett (1)
• Ralf Gommers (3)
• Rohit Goswami (1)
• Matt Haberland (4)
• Parth Nobel (1) +
• Tyler Reddy (33)
• Daniel Schmitz (2)
• Dan Schult (5)
• Scott Shambaugh (2)
• Edgar Andrés Margffoy Tuay (1)
• Warren Weckesser (4)

A total of 14 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.

SciPy 1.15.1 Release Notes

SciPy 1.15.1 is a bug-fix release with no new features compared to 1.15.0. Importantly, an issue with the import of scipy.optimize breaking other packages has been fixed.

Authors

• Name (commits)
• Ralf Gommers (3)
• Rohit Goswami (1)
• Matt Haberland (2)
• Tyler Reddy (7)
• Daniel Schmitz (1)

... (truncated)

Commits

• 0f1fd4a REL: 1.15.2 rel commit [wheel build]
• 7df5cc6 Merge pull request #22471 from tylerjereddy/treddy_backports_1.15.2
• a046fa0 CI: PR 22471 wheel builds [wheel build]
• 198aa52 DOC: PR 22471 revisions
• ba61a58 CI: PR 22471 revisions
• e0251ee do not check dtype in test_compare_with_GCVSPL
• fcc68dd MAINT: integrate.cumulative_simpson: bump test tolerance
• 6d2c059 BUG: wrap median_filter stability (#22402)
• 59cb7d4 DOC: PR 22471 revisions
• a60d17f MAINT: pearsonr SIMD-related shim
• Additional commits viewable in compare view

Updates matplotlib from 3.9.3 to 3.10.0

Release notes

Sourced from matplotlib's releases.

REL: v3.10.0

Highlights of this release include:

- Preliminary support for free-threaded CPython 3.13
- New more-accessible color cycle
- Dark-mode diverging colormaps
- Exception handling control
- InsetIndicator artist
- FillBetweenPolyCollection
- Fill between 3D lines
- Data in 3D plots can now be dynamically clipped to the axes view limits
- Rotating 3d plots with the mouse
- Increased Figure limits with Agg renderer
- Subfigures no longer provisional
- Subfigures are now added in row-major order

Matplotlib v3.10.0rc1

This is the first release candidate for Matplotlib 3.10.0

REL: 3.9.4

This is the fourth bugfix release of the 3.9.x series.

This release contains two bug-fixes:

• Fix toolbar icons in GTK backend
• Fix Poly3DCollection initialization with list of lists

Commits

• 8d64f03 REL: v3.10.0 release
• d9dfee8 [doc] Fix dead links
• 87a603f Update release notes for 3.10.0
• cdecf97 Update github stats for 3.10
• b8d19bd Merge pull request #29306 from meeseeksmachine/auto-backport-of-pr-29242-on-v...
• a42d0ed Backport PR #29242: DOC: Add kwdoc list to scatter() docstring
• 1900640 Merge pull request #29299 from QuLogic/merge-v39x
• 815389c Merge branch 'v3.9.x' into v3.10.x
• 73873c0 DOC: Create release notes for 3.9.4
• 9d17a2b DOC: Add Zenodo DOI for 3.9.4
• Additional commits viewable in compare view

Updates pylint from 3.3.2 to 3.3.4

Commits

• c2b01c3 Bump pylint to 3.3.4, update changelog
• 023cd43 [isort] Permit to use isort 6 (#10204)
• 050acfe Calculate linter.config.jobs in cgroupsv2 environments (#10089) (#10169)
• d6992b8 fix "skipped files" count calculation (#10141)
• c28580b Bump pylint to 3.3.3, update changelog
• 1f9b947 Bump astroid from 3.3.5 to 3.3.8 (#10125) (#10155)
• 96d1303 Bump actions/cache from 4.1.2 to 4.2.0 (#10123) (#10154)
• a7202b1 Fix Python 3.12 generic type syntax (#10135) (#10146)
• 90cb29d [mypy] Use type-setuptools instead of types-pkg-resources (#10120)
• 9955701 Fix 'use-implicit-booleaness' wrongly emitted for generators. (#10107) (#10109)
• See full diff in compare view

Updates mypy from 1.13.0 to 1.15.0

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next Release

Different Property Getter and Setter Types

Mypy now supports using different types for property getter and setter.

class A:
    value: int
@property
def f(self) -> int:
    return self.value
@f.setter
def f(self, x: str | int) -> None:
    try:
        self.value = int(x)
    except ValueError:
        raise Exception(f"'{x}' is not a valid value for 'f'")

Contributed by Ivan Levkivskyi (PR 18510)

Selectively Disable Deprecated Warnings

It's now possible to selectively disable warnings generated from warnings.deprecated using the --deprecated-calls-exclude option.

# mypy --enable-error-code deprecated
#      --deprecated-calls-exclude=foo.A
import foo
foo.A().func()  # OK, the deprecated warning is ignored
file foo.py
from typing_extensions import deprecated
class A:
@​deprecated("Use A.func2 instead")
def func(self): pass

Contributed by Marc Mueller (PR 18641)

Mypy 1.15

We’ve just uploaded mypy 1.15 to the Python Package Index (PyPI).

... (truncated)

Commits

• 9397454 remove +dev from version ahead of final release
• 686b591 remove "unreleased" from 1.15 changelog entry
• cb4b243 Various small updates to 1.15 changelog (#18599)
• 1a26502 Prepare changelog for 1.15 release (#18583)
• d4515e4 Fix a few PR links in the changelog (#18586)
• f83b643 Add object self-type to tuple test fixture (#18592)
• ebc2cb8 Prevent crash on generic NamedTuple with unresolved typevar bound (#18585)
• 63c251e empty commit to trigger wheel rebuild
• c30573e Fix literal context for ternary expressions (for real) (#18545)
• 23d862d Fix isinstance with explicit (non generic) type alias (#18512)
• Additional commits viewable in compare view

Updates sphinx-autoapi from 3.4.0 to 3.6.0

Release notes

Sourced from sphinx-autoapi's releases.

v3.6.0

Features

• Render type aliases properly rather than as an assignment (#414)

Misc

• Drop support for Python 3.8
• Fix readthedocs build

v3.5.0

Features

• Can exclude directories from being documented (#312)

Bugfixes

• Fix exception when calling a function imported from a wildcard (#508)
• Remove usage of astroid alpha builds (#512)

Misc

• #502, #510, #511
• Fix formatting failure in tests

Changelog

Sourced from sphinx-autoapi's changelog.

v3.6.0 (2025-02-17)

Features ^^^^^^^^

• Render type aliases properly rather than as an assignment (#414)

Misc ^^^^

• Drop support for Python 3.8
• Fix readthedocs build

v3.5.0 (2025-02-09)

Features ^^^^^^^^

• Can exclude directories from being documented (#312)

Bugfixes ^^^^^^^^

• Fix exception when calling a function imported from a wildcard (#508)
• Remove usage of astroid alpha builds (#512)

Misc ^^^^

• #502, #510, #511
• Fix formatting failure in tests

Commits

• 6dae5a3 Version 3.6.0
• b846a0c Render type aliases properly rather than as an assignment
• 5af3ffe Drop support for Python 3.8
• 2adc083 Use latest OS and Python on readthedocs
• 3ec34fe Fix readthedocs build
• 26bd172 Version 3.5.0
• 086dff8 Fixes for PR #503
• b4c75f7 Allow skipping entire directories
• a7a973d Make _need_to_load not assume that file ordering remained the same
• 6fdc914 Fix inclusion of tests in the sdist
• Additional commits viewable in compare view

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