CU-869anj8ub: Add initial commit of WWC conversion #153
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Task linked: CU-869anj8ub Move medcat-scripts to cogstack-nlp |
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| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: [ '3.9', '3.10', '3.11', '3.12' ] | ||
| max-parallel: 4 | ||
| steps: | ||
| - uses: actions/checkout@v5 | ||
| - name: Install uv for Python ${{ matrix.python-version }} | ||
| uses: astral-sh/setup-uv@v6 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| enable-cache: true | ||
| - name: Install the project | ||
| run: | | ||
| uv venv .venv | ||
| source .venv/bin/activate | ||
| uv run python -m ensurepip | ||
| uv pip install -r requirements.txt | ||
| uv pip install -r requirements-dev.txt | ||
| - name: Check types | ||
| run: | | ||
| # NOTE: Only testing against .py files in this folder | ||
| uv run python -m mypy `git ls-tree --full-tree --name-only -r HEAD | grep ".py$" | grep "^medcat-scripts" | grep -v "tests/" | sed 's|^medcat-scripts/||'` --explicit-package-bases --follow-imports=normal | ||
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| - name: Setup for notebook tests | ||
| run: | | ||
| # NOTE: this will make sure there's something in the den to work with below | ||
| uv run python tests/setup_for_tests.py | ||
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| - name: Install IPython kernel | ||
| run: | | ||
| uv run python -m ipykernel install --name smoketests --user | ||
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| - name: Run tests | ||
| run: | | ||
| uv run pytest tests | ||
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| - name: Test notebooks | ||
| run: | | ||
| uv run pytest --collect-only --nbmake **/*.ipynb | ||
| uv run pytest --nbmake -n=auto --nbmake-kernel=smoketests --nbmake-timeout=1800 **/*.ipynb No newline at end of file |
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This is the
working_with_cogstackreplacement.It will use
medcat_denunder the hood for centralised model storage.working_with_cogstackmedcat-den