[WIP] `MicrographSource`/`Image` updates - #1288

Draft

garrettwrong wants to merge 24 commits into

Commits on Jan 13, 2026

array shape patch for scipy 1.17.0
garrettwrong
committed
edcbcea

Commits on Jan 15, 2026

Initial CLMatrix class implementation.
j-c-c
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a4bbfcc
docstring
j-c-c
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0d841d7
rename cuda file to commonline_matrix
j-c-c
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0b5f74b
isort/black
j-c-c
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d3edd0b
C2 inheret from CLMatrix for lazy clmatrix property.
j-c-c
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edcf1a8
remove unused/empty CL files
j-c-c
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82fd738
remove self.build_clmatrix
j-c-c
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3380fd1
basic testing for CLMatrix class
j-c-c
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80d1d51
tox
j-c-c
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dbdf981
remove unused args
j-c-c
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4c72520
CLMatrix --> CLMatrixOrient3D
j-c-c
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8d03765
disable_gpu arg
j-c-c
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43d4215

Commits on Jan 20, 2026

Make np `where` args explicit with `out=`.
garrettwrong
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9bb7667

Commits on Jan 30, 2026

pin confuse to 2.1.0
j-c-c
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7d2d875

Commits on Feb 4, 2026

Patch the direct covar est solver.
garrettwrong
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0365c3a
Add condition number for diag
garrettwrong
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f45cf8e
initial MicrographSource/Image extension to rect shapes
garrettwrong
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acbdce5
draft extension of grid_2d and image.filter to rectangle
garrettwrong
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039d67c
add draft of `phase_flip` to `MicrographSource`
garrettwrong
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7deccd9
the joy of rebasing
garrettwrong
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01a81e7
minor dtype regression
garrettwrong
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ef1208b
tox
garrettwrong
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389f85a
docstring update
garrettwrong
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7132fb1