SPDI normalization with refseq files #39

	name: CI/CD

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main, dev]

	workflow_dispatch:

	jobs:
	test:
	name: Test
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v2

	- name: Install pip
	run: python -m pip install --upgrade pip

	- name: Install Dependencies
	run: pip install -r requirements.txt

	- name: Lint with flake8
	uses: py-actions/flake8@v2
	with:
	args: --extend-ignore E501,E741

	- name: Run Tests
	run: ./fetch_refseq.sh && python -m pytest

	deploy:
	name: Deploy to dev
	runs-on: ubuntu-latest

	if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' && always() && contains(join(needs.*.result, ','), 'success') }}
	needs: [test]

	steps:
	- uses: actions/checkout@v2

	- uses: akhileshns/[email protected]
	with:
	heroku_api_key: ${{ secrets.HEROKU_API_KEY }}
	heroku_app_name: ${{ secrets.HEROKU_DEV_APP_NAME }}
	heroku_email: ${{ secrets.HEROKU_EMAIL }}

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