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Add all CUBE1 related deployments
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jennydaman committed Feb 9, 2024
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81 changes: 80 additions & 1 deletion docs/internal/deployments/data.tsx
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import { DeploymentInfo, SrcType } from "./model";
import {DeploymentInfo, SrcType} from "./model";
import * as React from "react";
import Link from "@docusaurus/Link";

const deployments: DeploymentInfo[] = [
{
url: "https://app1.chrisproject.org",
src: {
type: SrcType.OpenShift,
value: "https://console.apps.shift.nerc.mghpcc.org/k8s/ns/hosting-of-medical-image-analysis-platform-dcb83b/buildconfigs/app1-chrisproject-org"
},
description: "ChRIS_ui for CUBE1",
host: "NERC (OpenShift)",
isChris: true,
public: true
},
{
url: "https://cube1.chrisproject.org/api/v1/",
src: {
type: SrcType.GitHub,
value: "https://github.com/FNNDSC/NERC/tree/master/cube1"
},
description: (<span>Our first, 100% OpenShift deployment of <em>ChRIS</em>.</span>),
notes: (
<p>
<em>CUBE</em>, <em>pfcon</em>, and all plugin instance jobs are confined to run on a single node.
This is because ReadWriteMany filesystem volumes are not available.
See <a href="https://github.com/nerc-project/operations/issues/171">"The Big Storage Issue."</a>
</p>
),
host: "NERC (OpenShift)",
isChris: true,
public: true
},
{
url: "https://orthanc.chrisproject.org",
src: {
type: SrcType.GitHub,
value: "https://github.com/FNNDSC/NERC/tree/master/cube1"
},
description: "Orthanc PACS server for CUBE1",
notes: (<div>
<p>
Login account credentials can be obtained from{' '}
<a
href="https://console.apps.shift.nerc.mghpcc.org/k8s/ns/hosting-of-medical-image-analysis-platform-dcb83b/secrets/cube1-orthanc">
OpenShift Console
</a>.
</p>
<p>
The GitHub repository also provides some helpful scripts:
</p>
<p>
<ul>
<li>
<code>scripts/list_mrns.sh</code>: lists MRNs of patients in Orthanc
</li>
<li>
<code>scripts/upload2orthanc.sh</code>: bulk upload of DICOM files to Orthanc
</li>
</ul>
</p>
</div>),
host: "NERC (OpenShift)",
isChris: false,
public: true
},
{
url: "https://ohif.chrisproject.org",
src: {
type: SrcType.GitHub,
value: "https://github.com/FNNDSC/NERC/tree/master/cube1"
},
description: (<span>
<a href="https://ohif.org/">
<em>OHIF</em>
</a>{' '}
viewer for the <em>pfdcm</em> filesystem cache of CUBE1.
</span>),
notes: "Keep in mind that this OHIF displays data stored by PFDCM (which is mostly the same as but is not guaranteed to be the same data as CUBE PACSfiles).",
host: "NERC (OpenShift)",
isChris: false,
public: true
},
{
url: "https://cube.chrisproject.org/api/v1/",
description: (
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