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genome array compacted #15

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eec16a4
add new module
molpopgen Mar 20, 2024
7891b8e
remove comments
molpopgen Mar 20, 2024
0bed5a1
note the problem
molpopgen Mar 20, 2024
d25a704
hack together working implementation and add example
molpopgen Mar 20, 2024
87fef19
comment out the todo
molpopgen Mar 20, 2024
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20 changes: 20 additions & 0 deletions examples/genome_array_compacted.rs
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Original file line number Diff line number Diff line change
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use clap::Parser;
use forrustts::genetics::GeneticMap;
use forrustts::genetics::GeneticMapBuilder;
use forrustts::genetics::PoissonCrossover;

use design_playground::genome_array_compacted::*;
use design_playground::SimParams;

fn main() {
let params = SimParams::parse();
let poisson = vec![PoissonCrossover::new(0, 1000000, params.recrate).unwrap()];
let builder = GeneticMapBuilder::default().extend_poisson(&poisson);
let genetic_map = GeneticMap::new_from_builder(builder).unwrap();
let pop = evolve_pop(params, genetic_map).unwrap();
println!(
"{} {}",
pop.num_segregating_mutations(),
pop.sum_extant_genome_sizes()
);
}
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