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@GoekeLab

Göke Lab

Computational Transcriptomics - Third Generation Sequencing

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  1. sg-nex-data sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    Jupyter Notebook 111 25

  2. bambu bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    R 189 24

  3. xpore xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    Python 137 23

  4. m6anet m6anet Public

    Detection of m6A from direct RNA-Seq data

    Python 107 19

  5. bioinformatics-workflows bioinformatics-workflows Public

    minimal example implementations for bioinformatics workflow managers

    Python 261 45

  6. awesome-nanopore awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    236 44

Repositories

Showing 10 of 16 repositories
  • xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    GoekeLab/xpore’s past year of commit activity
    Python 137 MIT 23 30 1 Updated Nov 7, 2024
  • bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    GoekeLab/bambu’s past year of commit activity
    R 189 GPL-3.0 24 32 2 Updated Nov 5, 2024
  • bambu-singlecell-spatial Public

    Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

    GoekeLab/bambu-singlecell-spatial’s past year of commit activity
    Nextflow 3 GPL-3.0 0 2 0 Updated Oct 28, 2024
  • sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    GoekeLab/sg-nex-data’s past year of commit activity
    Jupyter Notebook 111 25 8 1 Updated Oct 21, 2024
  • m6anet Public

    Detection of m6A from direct RNA-Seq data

    GoekeLab/m6anet’s past year of commit activity
    Python 107 MIT 19 21 0 Updated Aug 26, 2024
  • awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    GoekeLab/awesome-nanopore’s past year of commit activity
    236 MIT 44 1 0 Updated Aug 6, 2024
  • NanoporeRNASeq Public

    Nanopore RNASeq data

    GoekeLab/NanoporeRNASeq’s past year of commit activity
    R 8 MIT 1 0 0 Updated Oct 25, 2022
  • proActiv Public

    Estimation of Promoter Activity from RNA-Seq data

    GoekeLab/proActiv’s past year of commit activity
    R 49 14 12 0 Updated Jan 24, 2022
  • nanoseq Public Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline

    GoekeLab/nanoseq’s past year of commit activity
    Nextflow 4 MIT 80 0 0 Updated Dec 17, 2021
  • containers Public Forked from BioContainers/containers

    Bioinformatics containers

    GoekeLab/containers’s past year of commit activity
    Dockerfile 2 Apache-2.0 249 0 0 Updated Nov 3, 2021

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