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  1. DL4Proteins-notebooks DL4Proteins-notebooks Public

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Jupyter Notebook 445 69

  2. IgFold IgFold Public

    Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

    Python 383 69

  3. IgLM IgLM Public

    Generative Language Modeling for Antibody Design

    Python 170 30

  4. GeoDock GeoDock Public

    Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Python 98 17

  5. FLAb FLAb Public

    Fitness landscapes for antibodies

    Python 89 13

  6. AlphaRED AlphaRED Public

    AlphaFold-initiated replica exchange protein docking

    Python 84 16

Repositories

Showing 10 of 17 repositories
  • DL4Proteins-notebooks Public

    Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

    Graylab/DL4Proteins-notebooks’s past year of commit activity
    Jupyter Notebook 445 MIT 69 4 1 Updated Sep 22, 2025
  • dockqc Public

    Benchmark of protein-carbohydrate interactions

    Graylab/dockqc’s past year of commit activity
    Python 0 0 0 0 Updated Sep 9, 2025
  • FLAb Public

    Fitness landscapes for antibodies

    Graylab/FLAb’s past year of commit activity
    Python 89 13 7 0 Updated Sep 1, 2025
  • DFMDock Public

    DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.

    Graylab/DFMDock’s past year of commit activity
    Python 49 MIT 7 2 2 Updated Jul 22, 2025
  • picap Public

    CAPSIF2 and PiCAP

    Graylab/picap’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Jun 5, 2025
  • AlphaRED Public

    AlphaFold-initiated replica exchange protein docking

    Graylab/AlphaRED’s past year of commit activity
    Python 84 MIT 16 8 3 Updated Jun 5, 2025
  • MaskedProteinEnT Public
    Graylab/MaskedProteinEnT’s past year of commit activity
    Python 12 5 0 2 Updated Dec 2, 2024
  • IgLM Public

    Generative Language Modeling for Antibody Design

    Graylab/IgLM’s past year of commit activity
    Python 170 30 5 0 Updated Oct 5, 2024
  • GeoDock Public

    Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

    Graylab/GeoDock’s past year of commit activity
    Python 98 MIT 17 6 0 Updated Jul 29, 2024
  • MPDock Public

    This repository contains the dataset of 29 transmembrane protein complexes of different rigidity along with their unbound protein structure. Additionally, there are scripts to submit relaxing and docking complexes given there unbound monomer structures.

    Graylab/MPDock’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Jul 5, 2024
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