skilled_reaching_pipeline

pipeline to analyze skilled reaching videos to acquisition through deeplabcut and 3D reconstruction

Name		Name	Last commit message	Last commit date
Latest commit History 589 Commits
.idea		.idea
.ipynb_checkpoints		.ipynb_checkpoints
__pycache__		__pycache__
AniposeCalibrate_README.pdf		AniposeCalibrate_README.pdf
Leventhal 3660.pdf		Leventhal 3660.pdf
New sizes for intermediate-fixed margins.pdf		New sizes for intermediate-fixed margins.pdf
README.md		README.md
Untitled.ipynb		Untitled.ipynb
analyze_3d_recons.py		analyze_3d_recons.py
anipose_utils.py		anipose_utils.py
aniposefilter_pose.py		aniposefilter_pose.py
boards.py		boards.py
calib_test.ipynb		calib_test.ipynb
camera_intrinsics_anipose_test.ipynb		camera_intrinsics_anipose_test.ipynb
cameras.py		cameras.py
charuco_100x70_10x7_10_7_DICT_4x4_50_600dpi.tiff		charuco_100x70_10x7_10_7_DICT_4x4_50_600dpi.tiff
charuco_70x100_7x10_10_7_DICT_4x4_50_600dpi.tiff		charuco_70x100_7x10_10_7_DICT_4x4_50_600dpi.tiff
check_cb_id.ipynb		check_cb_id.ipynb
common.py		common.py
compute_angles.py		compute_angles.py
computer_vision_basics.py		computer_vision_basics.py
create_evaluation_csv.py		create_evaluation_csv.py
crop_Burgess_videos.py		crop_Burgess_videos.py
crop_videos.py		crop_videos.py
dlc_utilities.py		dlc_utilities.py
fund_mat_from_mouse_vid_folder.m		fund_mat_from_mouse_vid_folder.m
fund_mat_from_mouse_vids.m		fund_mat_from_mouse_vids.m
fund_mat_from_vids.m		fund_mat_from_vids.m
integrate_phys_kinematics.py		integrate_phys_kinematics.py
navigation_utilities.py		navigation_utilities.py
optitrack_calibration_testing.ipynb		optitrack_calibration_testing.ipynb
photometry_analysis.py		photometry_analysis.py
photometry_analysis_plots.py		photometry_analysis_plots.py
photometry_io_skilledreaching.py		photometry_io_skilledreaching.py
plot_utilities.py		plot_utilities.py
rat_df_code.docx		rat_df_code.docx
reconstruct_3d.py		reconstruct_3d.py
reconstruct_3d_optitrack.py		reconstruct_3d_optitrack.py
script_fundamental_matrix_from_videos.m		script_fundamental_matrix_from_videos.m
skilled_reaching_calibration.py		skilled_reaching_calibration.py
skilled_reaching_io.py		skilled_reaching_io.py
skilled_reaching_workflow.py		skilled_reaching_workflow.py
skilled_reaching_workflow_Burgess.py		skilled_reaching_workflow_Burgess.py
sr_analysis.py		sr_analysis.py
sr_behavior_summary.py		sr_behavior_summary.py
sr_photometry_analysis.py		sr_photometry_analysis.py
sr_visualization.py		sr_visualization.py
stereo_calibrate_from_vidframe.ipynb		stereo_calibrate_from_vidframe.ipynb
train_autoencoder.py		train_autoencoder.py
utils.py		utils.py

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