Issues

• The certificate of ‘tbb.bio.uu.nl’ is not trusted.

  MGXlab/CAT_pack#150 · Filter by author Kekananen opened on Jan 11, 2026

• ERROR with RAT addnames

  MGXlab/CAT_pack#148 · Filter by author chaoyanggu opened on Jul 18, 2025

• ERROR with RAT addnames

  MGXlab/CAT_pack#147 · Filter by author chaoyanggu opened on Jul 18, 2025

• 404 Error while download GTDB r226

  MGXlab/CAT_pack#145 · Filter by author gracegyho opened on Jul 2, 2025
  1

• RAT KeyError

  MGXlab/CAT_pack#144 · Filter by author its-snj opened on Jun 30, 2025
  

• Add bin_map command

  MGXlab/CAT_pack#143 · Filter by author chlige opened on May 10, 2025

• BAT finished abnormally

  MGXlab/CAT_pack#142 · Filter by author wjj666 opened on Apr 30, 2025
  1

• about database use

  MGXlab/CAT_pack#141 · Filter by author wfgui opened on Apr 24, 2025

• Can CAT assign taxonomy to full length 16S gene?

  MGXlab/CAT_pack#139 · Filter by author JSSaini opened on Feb 20, 2025

• Is directly using DIAMOND to assign taxonomy for reads not recommended?

  MGXlab/CAT_pack#138 · Filter by author HuoJnx opened on Jan 7, 2025

• Possible to run RAT alone to perform taxonomic profiling of reads? (--mode r)

  MGXlab/CAT_pack#137 · Filter by author JSSaini opened on Dec 6, 2024

• md5sum collision now feasible in FASTA charset

  MGXlab/CAT_pack#136 · Filter by author Artoria2e5 opened on Dec 5, 2024

• reads.py errors

  MGXlab/CAT_pack#135 · Filter by author sheaster opened on Nov 19, 2024
  1

  

• How to handle species values ending in 'bacterium', sometimes with bin information

  MGXlab/CAT_pack#134 · Filter by author Dries-B opened on Oct 29, 2024
  3

• Questions Regarding RAT Tool and Contig Processing

  MGXlab/CAT_pack#133 · Filter by author lucianhu opened on Oct 11, 2024
  11

• potential overcommit on slurm submission

  MGXlab/CAT_pack#132 · Filter by author EricDeveaud opened on Sep 21, 2024

• Suggestions for better documentation on RAT inputs

  MGXlab/CAT_pack#131 · Filter by author aoliver44 opened on Sep 18, 2024
  3

• Error in RAT make_tax_table

  MGXlab/CAT_pack#130 · Filter by author jbh2313 opened on Aug 22, 2024
  1

  

• Updating Bioconda Package

  MGXlab/CAT_pack#129 · Filter by author jbh2313 opened on Aug 14, 2024

• RAT error in --mode mcr

  MGXlab/CAT_pack#128 · Filter by author Pompamm opened on Aug 11, 2024
  

• abnormally finished DIAMOND and BWA regarding

  MGXlab/CAT_pack#127 · Filter by author SrichandanPadhi opened on Jun 27, 2024

• Process gets killed after 1st step of "make_diamond_database"

  MGXlab/CAT_pack#126 · Filter by author Harpreet525 opened on Jun 12, 2024

• ERROR: some bins have multiple classifications. CAT summarise currently does not allow for this

  MGXlab/CAT_pack#125 · Filter by author soojunglee98 opened on Jun 11, 2024

• Is RAT for single samples or multiple samples analysis?

  MGXlab/CAT_pack#124 · Filter by author biofuture opened on Jun 3, 2024

• issue with add_names

  MGXlab/CAT_pack#123 · Filter by author SrichandanPadhi opened on May 23, 2024