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niicat

This is a tool to quickly preview nifti images on the terminal. This can be helpful if you are working on a remote server via SSH and do not have a -X connection. Niicat can also display png, jpg or similar images.

Your terminal must support inline images. Ubuntu's default terminal (GNOME Terminal / Ptyxis), Apple Terminal, and Alacritty do not. When using SSH, it is the terminal on your local machine that must support the protocol.

Flag Protocol Works in
(default) iTerm2 imgcat iTerm2, WezTerm, VS Code (enable terminal.integrated.enableImages)
-kt Kitty graphics Kitty, Ghostty, WezTerm
-lb / -ls Sixel mlterm, foot, WezTerm, Konsole, Windows Terminal, xterm (-ti 340)

Install:

pip install niicat

Usage:

niicat T1.nii.gz

If nothing is displayed, your terminal likely does not support the selected protocol. Try another flag from the table above, or switch to a terminal that does.

-lb uses img2sixel from libsixel-bin (sudo apt install libsixel-bin). -ls uses libsixel-python.

Niicat was only tested on python >= 3.7.

Copyright

Copyright © German Cancer Research Center (DKFZ), Division of Medical Image Computing (MIC). Please make sure that your usage of this code is in compliance with the code license.

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This is a tool to quickly preview nifti images on the terminal

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