Skip to content

Pull request #3

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 36 commits into
base: master
Choose a base branch
from
Open

Pull request #3

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
36 commits
Select commit Hold shift + click to select a range
9d2e4bc
Update _config.yml
talimass Jan 9, 2021
acac264
Update README.md
talimass Jan 9, 2021
111e0cc
Add files via upload
talimass Jan 9, 2021
2c2c422
Update _config.yml
talimass Jan 9, 2021
d58506e
Add files via upload
talimass Jan 9, 2021
6d57549
Add files via upload
talimass Jan 9, 2021
a3e3379
Add files via upload
talimass Jan 9, 2021
564ea5c
Add files via upload
talimass Jan 9, 2021
30e482e
Add files via upload
talimass Jan 9, 2021
c0399bd
Delete 2021-1-9-Cell culture protocol.md
talimass Jan 9, 2021
78749e9
Delete 2022021-01-09-Coverslips coating for cell culture.md
talimass Jan 9, 2021
a2eb9fc
Delete 2022021-1-9-Coverslips coating for cell culture.md
talimass Jan 9, 2021
1ba59ec
Add files via upload
talimass Jan 9, 2021
0618903
Update 2021-01-09-Cell culture protocol.md
talimass Jan 10, 2021
e07cad2
Add files via upload
talimass Jan 14, 2021
0cf12ff
Update 2021-01-14-Sample prep_Fixation embedding and polishing protoc…
talimass Jan 14, 2021
2a9fe4a
Create Forking_Modifying.md
talimass May 13, 2023
1ccd0d3
Update Forking_Modifying.md
talimass May 13, 2023
3dc3611
Update Forking_Modifying.md
talimass May 13, 2023
e8d5722
add
talimass May 13, 2023
62d1475
Update <center> Steps-.md
talimass May 13, 2023
4a05994
Respirometer manual update
talimass May 27, 2023
56c0f36
Create Tank set up.jpg
talimass May 27, 2023
a30cf16
images
talimass May 27, 2023
dd32f54
Set up images and the manual
talimass Jun 9, 2023
1d0381b
move pdf
talimass Jun 9, 2023
52f08f5
return
talimass Jun 9, 2023
36973e8
more protocols
talimass Jun 9, 2023
3467ef9
updated the respirometer protocol
talimass Jun 9, 2023
e14c1f3
adding DIP and Cladocora data
talimass Oct 4, 2023
8ce456b
change name
talimass Jan 21, 2024
c920421
name change
talimass Jan 21, 2024
a2abb31
Update 2024-01-21-Forking_Modifying.md
talimass Apr 27, 2024
dd449c9
update table
talimass Apr 2, 2025
d0a6d51
pictures from soliel 2025
talimass May 31, 2025
81f44dc
change name
talimass May 31, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
46 changes: 46 additions & 0 deletions Cladocora/Data/FIRe Sep 2023/20092023_Cladocora_Leonit_and_Naharia.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,46 @@
,...1,Species,Colony,depth,Site,File,Time,DATE,TIME,PAR,Depth(m),T(C),Battery_V,Dark_Fo,Fm,Fv,fv_fm,Sigma,p,Alp1,Tau1,Alp2,Tau2,Alp3,Tau3,Alp4,Tau4,TauAv1,TauAv2,GAIN,Light_Fo,Fm.1,Fv.1,Fv_Fm.1,Sigma.1,p.1,Alp1.1,Tau1.1,Alp2.1,Tau2.1,Alp3.1,Tau3.1,Alp4.1,Tau4.1,TauAv1.1,TauAv2.1,Pmax.e.s
1,1,Cladocora,1,30,Leonid,20230920,N,9/20/2023,30670,609.6,14,29.5,16.5,353,708.3,355.3,0.502,385.3,0.12,0.69,334,0.22,2099,0.09,81397,--------,-------,767,8021,0,745.3,869,123.7,0.142,211,0.06,0.253,649,0.043,11299,0.704,11307,--------,-------,8487,8606,117.8
2,2,Cladocora,1,30,Leonid,20230920,N,9/20/2023,30680,766.2,14,29.5,16.49,301.4,594.6,293.2,0.493,375.2,0.14,0.66,368,0.25,2179,0.1,113811,--------,-------,863,11662,0,673.3,776.6,103.3,0.133,238.3,0,0.25,778,0.054,9488,0.696,9492,--------,-------,7187,7311,139.1
3,3,Cladocora,1,30,Leonid,20230920,N,9/20/2023,30693,600.3,13.9,29.5,16.49,334.3,665.4,331.1,0.498,389.3,0.15,0.66,291,0.25,1769,0.09,104182,--------,-------,691,10327,0,890.7,1013.8,123.1,0.121,217.5,0,0.2,626,0.055,11580,0.745,11594,--------,-------,9269,9395,107.9
4,4,Cladocora,1,30,Leonid,20230920,N,9/20/2023,30700,471.3,13.9,29.5,16.48,243.6,465.3,221.8,0.477,333.6,0.09,0.71,407,0.18,3576,0.11,73977,--------,-------,1044,9268,200,567,646.6,79.6,0.123,197.5,0.03,0.203,552,0.033,14654,0.764,14661,--------,-------,11698,11796,85.5
5,5,Cladocora,1,30,Leonid,20230920.01,N,9/20/2023,30708,600.9,13.9,29.5,16.48,349.6,684.3,334.7,0.489,417.2,0.18,0.65,346,0.25,2103,0.1,136976,--------,-------,830,14338,0,867.6,997.5,129.9,0.13,229.3,0,0.246,749,0.055,10610,0.699,10611,--------,-------,8044,8185,124.3
6,6,Cladocora,2,30,Leonid,20230920.01,N,9/20/2023,30807,595,13.8,29.6,16.44,280.6,536,255.4,0.476,424.2,0.16,0.73,375,0.17,2439,0.1,106432,--------,-------,773,11429,0,648.7,751,102.3,0.136,202.5,0.02,0.253,676,0.7,11903,0.047,11914,--------,-------,8927,9067,112
7,7,Cladocora,2,30,Leonid,20230920.01,N,9/20/2023,30818,636.6,13.8,29.6,16.44,303.6,561.6,258,0.459,393.5,0.13,0.68,322,0.21,1760,0.11,146492,--------,-------,655,17180,200,783.3,895.8,112.5,0.126,211.7,0,0.235,680,0.714,11505,0.051,11507,--------,-------,8828,8965,113.3
8,8,Cladocora,2,30,Leonid,20230920.01,N,9/20/2023,30827,616.1,13.8,29.6,16.44,293.3,560.3,267,0.476,408.3,0.14,0.69,355,0.2,1896,0.11,105584,--------,-------,699,12285,0,734.5,847.1,112.6,0.133,208.5,0.02,0.239,582,0.706,12195,0.055,12202,--------,-------,9260,9422,108
9,9,Cladocora,2,30,Leonid,20230920.01,N,9/20/2023,30835,621.9,13.8,29.6,16.43,382.2,711.7,329.5,0.463,441,0.1,0.69,347,0.21,1872,0.1,86894,--------,-------,705,9166,0,870.4,1003.8,133.4,0.133,220.3,0,0.249,743,0.696,10783,0.055,10788,--------,-------,8135,8280,122.9
10,10,Cladocora,2,30,Leonid,20230920.01,N,9/20/2023,30845,553.7,13.8,29.6,16.43,314.4,593.3,278.9,0.47,408.6,0.16,0.66,309,0.24,1671,0.1,87151,--------,-------,669,9433,0,736.8,843.4,106.6,0.126,215.9,0,0.229,611,0.734,13346,0.037,13349,--------,-------,10320,10432,96.9
11,11,Cladocora,3,30,Leonid,20230920.01,N,9/20/2023,30913,551.6,13.8,29.6,16.41,309.8,607.2,297.4,0.49,400.9,0.11,0.64,294,0.25,1901,0.1,82661,--------,-------,748,9147,0,717.4,827.5,110.1,0.133,208.2,0,0.237,680,0.038,12220,0.724,12229,--------,-------,9380,9489,106.6
12,12,Cladocora,3,30,Leonid,20230920.01,N,9/20/2023,30922,504.3,13.8,29.6,16.41,314.6,612.2,297.6,0.486,402.5,0.09,0.64,324,0.26,1946,0.11,90535,--------,-------,791,10411,0,695.8,800.3,104.4,0.13,220.6,0,0.237,684,0.035,13362,0.728,13368,--------,-------,10251,10359,97.6
13,13,Cladocora,3,30,Leonid,20230920.01,N,9/20/2023,30934,453.4,13.8,29.6,16.4,332.7,638.3,305.6,0.479,421.9,0.07,0.73,392,0.17,2977,0.1,142329,--------,-------,879,15298,0,747.8,844,96.2,0.114,242.8,0.17,0.128,712,0.779,14556,0.093,29849,--------,-------,12606,14211,79.3
14,14,Cladocora,3,30,Leonid,20230920.01,N,9/20/2023,30943,517.1,13.8,29.6,16.4,324.8,619.2,294.5,0.476,425.4,0.09,0.66,346,0.23,1803,0.11,74873,--------,-------,724,9115,0,676.5,782.6,106.1,0.136,206.6,0,0.244,611,0.058,12469,0.698,12471,--------,-------,9398,9576,106.4
15,15,Cladocora,3,30,Leonid,20230920.02,N,9/20/2023,30953,379.5,13.9,29.6,16.4,261,491.3,230.3,0.469,367.4,0.07,0.62,318,0.24,1978,0.13,65601,--------,-------,786,9477,0,550.7,635.1,84.3,0.133,175.2,0,0.232,551,0.076,15944,0.692,15964,--------,-------,12088,12379,82.7
16,16,Cladocora,4,30,Leonid,20230920.02,N,9/20/2023,31011,377.9,13.9,29.6,16.38,347.5,666.7,319.2,0.479,394.5,0.07,0.64,319,0.24,1997,0.12,114350,--------,-------,778,14053,0,767.1,883.7,116.7,0.132,199.1,0,0.252,607,0.709,16072,0.039,16092,--------,-------,12023,12182,83.2
17,17,Cladocora,4,30,Leonid,20230920.02,N,9/20/2023,31019,502.8,13.8,29.6,16.38,340.8,656.9,316.1,0.481,437.1,0.1,0.62,316,0.28,1569,0.1,92154,--------,-------,703,10072,0,712.9,822.1,109.2,0.133,215.3,0,0.224,602,0.074,12948,0.702,12957,--------,-------,9971,10192,100.3
18,18,Cladocora,4,30,Leonid,20230920.02,N,9/20/2023,31028,420.9,13.8,29.6,16.37,305.2,561.6,256.4,0.457,430.3,0.17,0.56,442,0.29,1310,0.14,27438,--------,-------,740,4607,0,574.4,660.1,85.7,0.13,209.6,0,0.241,643,0.064,15150,0.695,15162,--------,-------,11423,11661,87.5
19,19,Cladocora,4,30,Leonid,20230920.02,N,9/20/2023,31037,404.1,13.8,29.6,16.38,380.7,711.3,330.6,0.465,377.4,0.05,0.66,394,0.22,2380,0.12,96210,--------,-------,884,12384,0,774.3,889.8,115.5,0.13,235.8,0.2,0.188,714,0.726,15008,0.086,29872,--------,-------,12064,13597,82.9
20,20,Cladocora,4,30,Leonid,20230920.02,N,9/20/2023,31045,447.8,13.8,29.6,16.37,353,673.4,320.3,0.476,398.8,0.07,0.67,366,0.21,2355,0.12,102474,--------,-------,839,12794,0,766.9,884.7,117.8,0.133,209.8,0,0.229,607,0.722,14158,0.049,14186,--------,-------,10900,11061,91.7
21,21,Cladocora,5,30,Leonid,20230920.02,N,9/20/2023,31083,386,14,29.6,16.36,382.1,734.6,352.5,0.48,423.2,0.01,0.62,373,0.24,2015,0.13,71741,--------,-------,835,10138,0,732.4,838.8,106.4,0.127,216.3,0,0.211,580,0.74,15284,0.049,15297,--------,-------,12020,12181,83.2
22,22,Cladocora,5,30,Leonid,20230920.02,N,9/20/2023,31091,584.3,14.1,29.6,16.36,368.9,711.6,342.7,0.482,402.7,0.09,0.68,339,0.22,2181,0.1,123922,--------,-------,795,12756,0,792.9,911,118.1,0.13,229.8,0.01,0.261,716,0.049,11799,0.69,11803,--------,-------,8765,8914,114.1
23,23,Cladocora,5,30,Leonid,20230920.02,N,9/20/2023,31103,399.1,14,29.6,16.36,490.8,932.3,441.5,0.474,425,0.06,0.57,305,0.3,1695,0.13,89553,--------,-------,788,12265,0,1089.5,1219.5,130,0.107,240.5,0.18,0.106,753,0.806,15042,0.088,34163,--------,-------,13378,15209,74.8
24,24,Cladocora,5,30,Leonid,20230920.02,N,9/20/2023,31113,550.3,14,29.6,16.36,574.2,1105.9,531.6,0.481,466.6,0.06,0.64,379,0.26,2050,0.11,79678,--------,-------,861,9272,0,991,1129.8,138.8,0.123,236.4,0,0.246,755,0.7,11791,0.053,11807,--------,-------,8920,9075,112.1
25,25,Cladocora,5,30,Leonid,20230920.03,N,9/20/2023,31124,451.5,14,29.6,16.35,478.3,916.2,437.8,0.478,417,0.03,0.62,353,0.26,1985,0.12,76558,--------,-------,836,9914,0,1022.2,1160.6,138.4,0.119,212.2,0,0.202,672,0.764,14139,0.033,14151,--------,-------,11322,11417,88.3
26,26,Cladocora,6,10,Naharia,20230920.03,N,9/20/2023,37336,900,5,29.9,16.29,338.4,552.4,214,0.387,382.9,0.16,0.7,369,0.2,2144,0.1,138725,--------,-------,761,14319,0,632.4,728.5,96.1,0.132,246.3,0,0.352,675,0.59,8667,0.058,8722,--------,-------,5683,5858,176
27,27,Cladocora,6,10,Naharia,20230920.03,N,9/20/2023,37354,748.8,5.1,29.9,16.28,329.9,577.8,247.9,0.429,436.1,0.1,0.68,389,0.22,1964,0.1,91434,--------,-------,773,9862,0,701.5,791.4,89.8,0.113,269.3,0,0.236,795,0.059,10147,0.706,10160,--------,-------,7816,7953,127.9
28,28,Cladocora,6,10,Naharia,20230920.03,N,9/20/2023,37364,900,5,29.9,16.28,211.6,336.9,125.3,0.372,379,0.15,0.67,335,0.23,1836,0.1,98146,--------,-------,712,10888,300,289.9,333.3,43.4,0.13,238.3,0,0.38,734,0.545,8257,0.075,8298,--------,-------,5164,5398,193.7
29,29,Cladocora,6,10,Naharia,20230920.03,N,9/20/2023,37373,714.9,5,29.9,16.27,378.9,672.2,293.3,0.436,412.2,0.09,0.65,353,0.25,1819,0.1,71326,--------,-------,757,7935,0,770.3,868.9,98.6,0.114,249.6,0,0.226,749,0.713,10999,0.06,11008,--------,-------,8531,8681,117.2
30,30,Cladocora,6,10,Naharia,20230920.03,N,9/20/2023,37383,900,5,29.8,16.27,216.3,320.4,104.1,0.325,416.3,0.07,0.64,361,0.25,1480,0.12,63624,--------,-------,673,8027,200,240.2,273.2,33,0.121,297.4,0,0.45,852,0.037,7682,0.513,7785,--------,-------,4544,4660,220.1
31,31,Cladocora,7,10,Naharia,20230920.03,N,9/20/2023,37664,823.2,5,29.8,16.22,234.7,381.7,147,0.385,337,0.11,0.63,329,0.25,1278,0.12,26039,--------,-------,603,3652,0,700.4,781.3,81,0.104,263.2,0,0.204,779,0.726,10845,0.07,10862,--------,-------,8641,8797,115.7
32,32,Cladocora,7,10,Naharia,20230920.03,N,9/20/2023,37674,900,4.9,29.8,16.21,222,352.4,130.4,0.37,378.5,0.1,0.68,354,0.21,1719,0.11,87980,--------,-------,674,10363,200,355.6,417.2,61.5,0.147,242.2,0,0.485,829,0.062,7052,0.454,7134,--------,-------,3878,4074,257.8
33,33,Cladocora,7,10,Naharia,20230920.03,N,9/20/2023,37683,900,5,29.9,16.21,201.8,335.5,133.7,0.399,429.8,0.12,0.66,320,0.24,1652,0.1,127303,--------,-------,671,13829,300,352.3,410.8,58.5,0.142,264.7,0,0.437,698,0.473,6521,0.09,6667,--------,-------,3725,3991,268.4
34,34,Cladocora,7,10,Naharia,20230920.03,N,9/20/2023,37692,630,5,29.8,16.21,175.8,296.6,120.8,0.407,370.2,0,0.61,406,0.26,3131,0.14,68389,--------,-------,1221,10415,300,338.2,359.3,21.2,0.059,281.4,0,0.05,665,0.116,14562,0.833,14567,--------,-------,13774,13866,72.6
35,35,Cladocora,7,10,Naharia,20230920.04,N,9/20/2023,37701,900,4.9,29.9,16.2,340.3,576.6,236.3,0.41,410.7,0.12,0.7,388,0.2,2069,0.1,118553,--------,-------,767,12471,0,717.7,817.1,99.4,0.122,247.2,0,0.315,787,0.607,8097,0.078,8133,--------,-------,5599,5797,178.6
36,36,Cladocora,8,10,Naharia,20230920.04,N,9/20/2023,37809,900,4.9,29.8,16.18,279.2,484.6,205.3,0.424,364.5,0.13,0.74,429,0.17,3304,0.09,149827,--------,-------,961,14198,0,444.6,518.4,73.8,0.142,249.6,0,0.38,698,0.056,9376,0.564,9417,--------,-------,5907,6103,169.3
37,37,Cladocora,8,10,Naharia,20230920.04,N,9/20/2023,37819,900,4.9,29.8,16.18,252.5,435.3,182.8,0.42,376.4,0.16,0.67,325,0.24,1931,0.09,172710,--------,-------,744,16956,200,420.9,501.7,80.7,0.161,222.1,0,0.491,598,0.443,7116,0.066,7216,--------,-------,3691,3923,270.9
38,38,Cladocora,8,10,Naharia,20230920.04,N,9/20/2023,37831,900,5,29.8,16.18,210,356.6,146.7,0.411,332.1,0.16,0.65,320,0.25,1822,0.1,120628,--------,-------,737,13181,300,385.7,452.5,66.7,0.148,265.3,0,0.445,761,0.489,7969,0.066,8192,--------,-------,4536,4776,220.5
39,39,Cladocora,8,10,Naharia,20230920.04,N,9/20/2023,37841,900,4.9,29.8,16.17,257.3,409.8,152.6,0.372,407,0.13,0.68,351,0.22,2097,0.1,154797,--------,-------,775,15760,200,395.8,463.7,68,0.147,242.1,0.09,0.467,688,0.45,6791,0.082,6822,--------,-------,3683,3942,271.5
40,40,Cladocora,8,10,Naharia,20230920.04,N,9/20/2023,37850,700.1,4.9,29.8,16.17,331.5,626.2,294.7,0.471,401.6,0.12,0.71,394,0.19,2662,0.1,136193,--------,-------,882,14079,0,769.7,877,107.3,0.122,224.5,0,0.26,672,0.056,10728,0.684,10741,--------,-------,7968,8121,125.5
41,41,Cladocora,9,10,Naharia,20230920.04,N,9/20/2023,37998,575.7,4.9,29.8,16.14,375.2,708.2,333,0.47,427.9,0.05,0.7,369,0.2,2352,0.1,104512,--------,-------,811,11298,0,817.9,935,117.1,0.125,220,0,0.247,732,0.05,11644,0.703,11649,--------,-------,8811,8952,113.5
42,42,Cladocora,9,10,Naharia,20230920.04,N,9/20/2023,38007,882.7,4.8,29.8,16.14,385.4,691.1,305.6,0.442,437.1,0.11,0.71,344,0.19,1907,0.1,106871,--------,-------,675,10947,0,805.9,917.6,111.6,0.122,251.5,0,0.297,771,0.637,8341,0.066,8358,--------,-------,5935,6094,168.5
43,43,Cladocora,9,10,Naharia,20230920.04,N,9/20/2023,38016,731.4,4.8,29.8,16.14,339.6,626.2,286.6,0.458,392.5,0.11,0.69,339,0.21,2090,0.1,160382,--------,-------,754,16268,0,832.5,942.3,109.8,0.117,230.1,0,0.235,704,0.708,10473,0.057,10491,--------,-------,8043,8182,124.3
44,44,Cladocora,9,10,Naharia,20230920.04,N,9/20/2023,38025,900,4.9,29.8,16.13,236.5,385.3,148.8,0.386,384,0.16,0.74,352,0.17,2862,0.09,391385,--------,-------,817,34709,200,365.5,434.6,69.1,0.159,220.6,0,0.459,649,0.139,2523,0.402,7996,--------,-------,4083,3867,244.9
45,45,Cladocora,9,10,Naharia,20230920.05,N,9/20/2023,38035,829.8,4.8,29.8,16.13,318.5,581,262.6,0.452,414.8,0.13,0.65,297,0.26,1466,0.1,107751,--------,-------,628,11037,0,698.8,796.4,97.6,0.123,229.2,0,0.273,678,0.049,9149,0.678,9160,--------,-------,6722,6842,148.8
Loading