Folder 'Bulk searching for connections' contains code for searching for connections between text strings using the MATLAB function Regex.

Folder 'apifetcher + refList linking' contains code that will fetch a subset of metadata from BioModels. It also contains a version of the connection mapping that will look through references and diplay matches.

Folder 'connectionMapper + Vis' contains a program for visualising connections and exports a SIF-file of the network

Folder 'cytoscape' contains cytoscape networks generated with the dataset.

Folder 'editDataset' contains an interface for clustering the models by publication and annotating the dataset.