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@MouseLand

MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1.6k 444

  2. Kilosort Kilosort Public

    Fast spike sorting with drift correction

    Python 516 261

  3. suite2p suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 377 251

  4. rastermap rastermap Public

    a visualization method for neural data

    Python 215 49

  5. facemap facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 165 63

  6. stringer-pachitariu-et-al-2018b stringer-pachitariu-et-al-2018b Public

    Responses of 10,000 neurons to 2,800 natural images

    MATLAB 68 21

Repositories

Showing 10 of 21 repositories
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    MouseLand/facemap’s past year of commit activity
    Python 165 GPL-3.0 63 13 1 Updated Apr 4, 2025
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    MouseLand/cellpose’s past year of commit activity
    Jupyter Notebook 1,562 BSD-3-Clause 444 49 (2 issues need help) 15 Updated Apr 4, 2025
  • neuropop Public

    analysis tools for large-scale neural recordings

    MouseLand/neuropop’s past year of commit activity
    Python 13 GPL-3.0 2 0 0 Updated Apr 4, 2025
  • rastermap Public

    a visualization method for neural data

    MouseLand/rastermap’s past year of commit activity
    Python 215 GPL-3.0 49 8 0 Updated Apr 4, 2025
  • suite2p Public

    cell detection in calcium imaging recordings

    MouseLand/suite2p’s past year of commit activity
    Jupyter Notebook 377 GPL-3.0 251 111 (1 issue needs help) 12 Updated Apr 4, 2025
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    MouseLand/MouseLand.github.io’s past year of commit activity
    CSS 0 0 0 0 Updated Apr 4, 2025
  • Kilosort Public

    Fast spike sorting with drift correction

    MouseLand/Kilosort’s past year of commit activity
    Python 516 GPL-3.0 261 22 1 Updated Apr 4, 2025
  • critical_init Public

    code for Pachitariu et al 2025

    MouseLand/critical_init’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 28, 2025
  • cellpose-napari Public

    napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

    MouseLand/cellpose-napari’s past year of commit activity
    Python 52 BSD-3-Clause 25 10 2 Updated Oct 27, 2024
  • course-materials Public
    MouseLand/course-materials’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 0 0 Updated Aug 27, 2024
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