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Image file format python script (see #705) #707

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merged 3 commits into from
Jul 25, 2024

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felixS27
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As discussed in #705 I created the python script to read different image file formats and access their metadata.
The script is formatted similar to other python activities.
The script includes:

  • environment specifications
  • how to load different image file formats and access their metadata
  • a little exercise with the example .czi file
  • a little exercise where the participants should try out BioIO on their own images
  • how to save images
    The script does not include:
  • visually inspect the image with napari or similar
    I realized that for ImageJ there are two activities. One for open and inspect images and one for saving. The question is, if I should split the script to meet this configuration or if I should leave it like that and maybe just reference the script twice on the module page.
    I also updated the _module folder to have the python script integrated in the activity drop down menu.
    I hope I didn't forget anything. Otherwise please tell me and I can add/change things.

@tischi
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tischi commented Jul 25, 2024

Looks awesome!
Thanks so much!!

@tischi tischi merged commit 945109b into NEUBIAS:master Jul 25, 2024
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2 participants