Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

file=R/data_manipulation.R,line=3,col=40,[brace_linter] There should be a space before an opening curly brace.

file=R/data_manipulation.R,line=3,col=40,[paren_body_linter] There should be a space between a right parenthesis and a body expression.

file=R/data_manipulation.R,line=8,col=53,[brace_linter] There should be a space before an opening curly brace.

file=R/data_manipulation.R,line=8,col=53,[paren_body_linter] There should be a space between a right parenthesis and a body expression.

file=R/data_manipulation.R,line=9,col=3,[object_usage_linter] no visible global function definition for 'assay'

file=R/data_manipulation.R,line=9,col=3,[object_usage_linter] no visible global function definition for 'assay<-'

file=R/data_manipulation.R,line=9,col=3,[object_usage_linter] no visible global function definition for 'assay'

file=R/data_manipulation.R,line=9,col=45,[object_usage_linter] no visible binding for global variable 'temp'

file=R/data_manipulation.R,line=9,col=61,[T_and_F_symbol_linter] Use TRUE instead of the symbol T.