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update renv.lock
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hsiaoyi0504 committed Feb 16, 2025
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"Maintainer": "Sebastian Gibb <[email protected]>",
"Repository": "CRAN"
},
"MASS": {
"Package": "MASS",
"Version": "7.3-60.2",
"Source": "Repository",
"Priority": "recommended",
"Date": "2024-01-12",
"Revision": "$Rev: 3641 $",
"Depends": [
"R (>= 4.4.0)",
"grDevices",
"graphics",
"stats",
"utils"
],
"Imports": [
"methods"
],
"Suggests": [
"lattice",
"nlme",
"nnet",
"survival"
],
"Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"[email protected]\"), person(\"Bill\", \"Venables\", role = \"ctb\"), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\"))",
"Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).",
"Title": "Support Functions and Datasets for Venables and Ripley's MASS",
"LazyData": "yes",
"ByteCompile": "yes",
"License": "GPL-2 | GPL-3",
"URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
"Contact": "<[email protected]>",
"NeedsCompilation": "yes",
"Author": "Brian Ripley [aut, cre, cph], Bill Venables [ctb], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb]",
"Maintainer": "Brian Ripley <[email protected]>",
"Repository": "CRAN"
},
"MSnbase": {
"Package": "MSnbase",
"Version": "2.32.0",
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"Repository": "Bioconductor 3.20",
"NeedsCompilation": "yes"
},
"Matrix": {
"Package": "Matrix",
"Version": "1.7-0",
"Source": "Repository",
"VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h",
"Date": "2024-03-16",
"Priority": "recommended",
"Title": "Sparse and Dense Matrix Classes and Methods",
"Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
"License": "GPL (>= 2) | file LICENCE",
"URL": "https://Matrix.R-forge.R-project.org",
"BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
"Contact": "[email protected]",
"Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's matrix implementation\"))",
"Depends": [
"R (>= 4.4.0)",
"methods"
],
"Imports": [
"grDevices",
"graphics",
"grid",
"lattice",
"stats",
"utils"
],
"Suggests": [
"MASS",
"datasets",
"sfsmisc",
"tools"
],
"Enhances": [
"SparseM",
"graph"
],
"LazyData": "no",
"LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
"BuildResaveData": "no",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Mikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>), Timothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (<https://orcid.org/0000-0003-2753-1437>, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (base R's matrix implementation)",
"Maintainer": "Martin Maechler <[email protected]>",
"Repository": "CRAN"
},
"MatrixGenerics": {
"Package": "MatrixGenerics",
"Version": "1.18.1",
Expand Down Expand Up @@ -3357,6 +3438,23 @@
"Author": "Ted Natoli [aut, cre] (<https://orcid.org/0000-0002-0953-0206>)",
"Maintainer": "Ted Natoli <[email protected]>"
},
"codetools": {
"Package": "codetools",
"Version": "0.2-20",
"Source": "Repository",
"Priority": "recommended",
"Author": "Luke Tierney <[email protected]>",
"Description": "Code analysis tools for R.",
"Title": "Code Analysis Tools for R",
"Depends": [
"R (>= 2.1)"
],
"Maintainer": "Luke Tierney <[email protected]>",
"URL": "https://gitlab.com/luke-tierney/codetools",
"License": "GPL",
"NeedsCompilation": "no",
"Repository": "CRAN"
},
"colorspace": {
"Package": "colorspace",
"Version": "2.1-1",
Expand Down Expand Up @@ -5523,6 +5621,45 @@
"Maintainer": "Winston Chang <[email protected]>",
"Repository": "CRAN"
},
"lattice": {
"Package": "lattice",
"Version": "0.22-6",
"Source": "Repository",
"Date": "2024-03-20",
"Priority": "recommended",
"Title": "Trellis Graphics for R",
"Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"[email protected]\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )",
"Description": "A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.",
"Depends": [
"R (>= 4.0.0)"
],
"Suggests": [
"KernSmooth",
"MASS",
"latticeExtra",
"colorspace"
],
"Imports": [
"grid",
"grDevices",
"graphics",
"stats",
"utils"
],
"Enhances": [
"chron",
"zoo"
],
"LazyLoad": "yes",
"LazyData": "yes",
"License": "GPL (>= 2)",
"URL": "https://lattice.r-forge.r-project.org/",
"BugReports": "https://github.com/deepayan/lattice/issues",
"NeedsCompilation": "yes",
"Author": "Deepayan Sarkar [aut, cre] (<https://orcid.org/0000-0003-4107-1553>), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)",
"Maintainer": "Deepayan Sarkar <[email protected]>",
"Repository": "CRAN"
},
"lazyeval": {
"Package": "lazyeval",
"Version": "0.2.2",
Expand Down Expand Up @@ -5732,6 +5869,38 @@
"Maintainer": "Winston Chang <[email protected]>",
"Repository": "CRAN"
},
"mgcv": {
"Package": "mgcv",
"Version": "1.9-1",
"Source": "Repository",
"Author": "Simon Wood <[email protected]>",
"Maintainer": "Simon Wood <[email protected]>",
"Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation",
"Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) <doi:10.1201/9781315370279> for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.",
"Priority": "recommended",
"Depends": [
"R (>= 3.6.0)",
"nlme (>= 3.1-64)"
],
"Imports": [
"methods",
"stats",
"graphics",
"Matrix",
"splines",
"utils"
],
"Suggests": [
"parallel",
"survival",
"MASS"
],
"LazyLoad": "yes",
"ByteCompile": "yes",
"License": "GPL (>= 2)",
"NeedsCompilation": "yes",
"Repository": "CRAN"
},
"mime": {
"Package": "mime",
"Version": "0.12",
Expand Down Expand Up @@ -5919,6 +6088,41 @@
"Maintainer": "David Pierce <[email protected]>",
"Repository": "CRAN"
},
"nlme": {
"Package": "nlme",
"Version": "3.1-164",
"Source": "Repository",
"Date": "2023-11-27",
"Priority": "recommended",
"Title": "Linear and Nonlinear Mixed Effects Models",
"Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"[email protected]\", role = c(\"aut\", \"cre\")))",
"Contact": "see 'MailingList'",
"Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.",
"Depends": [
"R (>= 3.5.0)"
],
"Imports": [
"graphics",
"stats",
"utils",
"lattice"
],
"Suggests": [
"Hmisc",
"MASS",
"SASmixed"
],
"LazyData": "yes",
"Encoding": "UTF-8",
"License": "GPL (>= 2)",
"BugReports": "https://bugs.r-project.org",
"MailingList": "[email protected]",
"URL": "https://svn.r-project.org/R-packages/trunk/nlme/",
"NeedsCompilation": "yes",
"Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre]",
"Maintainer": "R Core Team <[email protected]>",
"Repository": "CRAN"
},
"norm": {
"Package": "norm",
"Version": "1.0-11.1",
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