Skip to content

Nesvilab/PepCentric-manuscript

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

4 Commits
.gitignore
.gitignore
 
 
2020-11-27-contam-UP000005640.fasta
2020-11-27-contam-UP000005640.fasta
 
 
2025-09-28-reviewed-UP000006548.fas
2025-09-28-reviewed-UP000006548.fas
 
 
KRAS.py
KRAS.py
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
SAP.py
SAP.py
 
 
arabidopsis_target.txt
arabidopsis_target.txt
 
 
entrapment_12.py
entrapment_12.py
 
 
generate_entrapment_peptides.bat
generate_entrapment_peptides.bat
 
 
generate_entrapment_peptides.py
generate_entrapment_peptides.py
 
 
generate_entrapment_peptides_arabidopsis.bat
generate_entrapment_peptides_arabidopsis.bat
 
 
generate_entrapment_peptides_arabidopsis.py
generate_entrapment_peptides_arabidopsis.py
 
 
human_shuffled.txt
human_shuffled.txt
 
 
human_target.txt
human_target.txt
 
 
pepquery_runtime.py
pepquery_runtime.py
 
 
sampled_shuffled_20240422_143758.txt
sampled_shuffled_20240422_143758.txt
 
 
sampled_target_arabidopsis_20250928_203450.txt
sampled_target_arabidopsis_20250928_203450.txt
 
 

Repository files navigation

Reference: Yu, F., Kong, A. T., Hsiao, Y., & Nesvizhskii, A. I. (2025). PepCentric Enables Fast Repository-Scale Proteogenomics Searches. bioRxiv, 2025-02.

About

Scripts to generate the results in the PepCentric paper

Resources

Readme

License

Apache-2.0 license
Activity
Custom properties

Stars

0 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases 1

1.0.0 Latest
Mar 15, 2026

Packages

 
 
 

Contributors

Languages