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Nesvilab · Jan 11, 2023 · 3efe88c · 3efe88c
1 parent 30623a9
commit 3efe88c
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Showing 2 changed files with 2 additions and 32 deletions.
diff --git a/Makefile b/Makefile
@@ -7,7 +7,7 @@ VERSION = $(shell date +%Y%m%d)
 BUILD = $(shell  date +%Y%m%d%H%M)
 
 TAG = v4.7.1
-RC = RC-1
+RC = RC-2
 
 LDFLAGS = -ldflags "-w -s -extldflags -static -X main.version=${TAG} -X main.build=${BUILD}"
 

diff --git a/lib/rep/updater.go b/lib/rep/updater.go
@@ -427,19 +427,9 @@ func (evi *Evidence) UpdateLayerswithDatabase(decoyTag string) {
 		}
 	}
 
-	// type prevNextAA struct {
-	// 	prev string
-	// 	next string
-	// }
-
-	// var pepPrevNextAA = make(map[string]prevNextAA)
-
 	replacerIL := strings.NewReplacer("L", "I")
 	for i := range evi.PSM {
 
-		//var prevAA string
-		//var nextAA string
-
 		rec := recordMap[evi.PSM[i].Protein]
 		evi.PSM[i].ProteinID = rec.ID
 		evi.PSM[i].EntryName = rec.EntryName
@@ -473,24 +463,10 @@ func (evi *Evidence) UpdateLayerswithDatabase(decoyTag string) {
 
 		// map the peptide to the protein
 		mstart := strings.Index(replacerIL.Replace(rec.Sequence), peptide)
-		mend := mstart + len(evi.PSM[i].Peptide)
+		mend := mstart + len(peptide)
 
 		evi.PSM[i].ProteinStart = mstart + adjustStart
 		evi.PSM[i].ProteinEnd = mend + adjustEnd
-
-		// if evi.PSM[i].PrevAA == "-" {
-		// 	prevAA = ""
-		// } else {
-		// 	prevAA = evi.PSM[i].PrevAA
-		// }
-
-		// if evi.PSM[i].NextAA == "-" {
-		// 	nextAA = ""
-		// } else {
-		// 	nextAA = evi.PSM[i].NextAA
-		// }
-
-		//pepPrevNextAA[evi.PSM[i].Peptide] = prevNextAA{prevAA, nextAA}
 	}
 
 	for i := range evi.Ions {
@@ -512,9 +488,6 @@ func (evi *Evidence) UpdateLayerswithDatabase(decoyTag string) {
 				evi.Ions[i].MappedGenes[recordMap[k].GeneNames] = struct{}{}
 			}
 		}
-		// pnAA := pepPrevNextAA[evi.Ions[i].Sequence]
-		// evi.Ions[i].PrevAA = pnAA.prev
-		// evi.Ions[i].NextAA = pnAA.next
 	}
 
 	for i := range evi.Peptides {
@@ -535,9 +508,6 @@ func (evi *Evidence) UpdateLayerswithDatabase(decoyTag string) {
 				evi.Peptides[i].MappedGenes[recordMap[k].GeneNames] = struct{}{}
 			}
 		}
-		// pnAA := pepPrevNextAA[evi.Peptides[i].Sequence]
-		// evi.Peptides[i].PrevAA = pnAA.prev
-		// evi.Peptides[i].NextAA = pnAA.next
 	}
 }