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RC 0.3.0 candidate - #40

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azimov wants to merge 67 commits into
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Open

RC 0.3.0 candidate#40
azimov wants to merge 67 commits into
mainfrom
develop

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@azimov

@azimov azimov commented Jul 10, 2026

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azimov and others added 30 commits February 25, 2026 10:10
* Add native ibis execution engine and expression loader

* Expose experimental execution API and optional extras

* Add execution API tests and package structure coverage

* Validate write options for append vs overwrite

* Raise ibis optional extra minimum to 11

---------

Co-authored-by: Jamie Gilbert <jamie.gilbert@azimov.co.uk>
* Initial implementation of extensions with waveform extension as an example

* Tests an examples for the use of extensions

* Moved waveform extension and created optional install patten
# Conflicts:
#	circe/cohortdefinition/cohort_expression_query_builder.py
#	circe/cohortdefinition/criteria.py
#	circe/cohortdefinition/printfriendly/markdown_render.py
egillax and others added 27 commits March 18, 2026 16:38
…ttings (#27)

* Implementaion of backwards compatable concept set support for TAB support

* more TAB test cases

* Tests to improve coverage and quality

* Tests to improve tests on concept set checkers
* reduce boilerplate in circe/execution/lower/* and normalize
* remove the hard-coded lowerer registry in lower/criteria.py
* clean up the Databricks workaround flow in circe/execution/databricks_compat.py

* Fixed import issues causing test failures

* Workaround for broken databricks tests
* Added basic claude instructions for clean pre-commits

* Added instructions on testing to keep agents targeted on their tasks

* Code cleanup
fix(execution): make ERA collapse ordering deterministic
@codecov

codecov Bot commented Jul 10, 2026

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Codecov Report

❌ Patch coverage is 89.13100% with 419 lines in your changes missing coverage. Please review.
⚠️ Please upload report for BASE (main@9c6e207). Learn more about missing BASE report.

Files with missing lines Patch % Lines
...e/extensions/waveform/builders/waveform_feature.py 16.92% 54 Missing ⚠️
...ons/waveform/builders/waveform_channel_metadata.py 20.75% 42 Missing ⚠️
...xtensions/waveform/builders/waveform_occurrence.py 22.44% 38 Missing ⚠️
.../extensions/waveform/builders/waveform_registry.py 24.44% 34 Missing ⚠️
...ohortdefinition/cohort_expression_query_builder.py 83.97% 25 Missing ⚠️
circe/io.py 56.09% 18 Missing ⚠️
circe/execution/engine/group_demographics.py 86.17% 13 Missing ⚠️
circe/cohortdefinition/criteria.py 93.18% 12 Missing ⚠️
circe/chat.py 0.00% 9 Missing ⚠️
...ce/check/checkers/base_corelated_criteria_check.py 52.63% 9 Missing ⚠️
... and 62 more
Additional details and impacted files
@@           Coverage Diff           @@
##             main      #40   +/-   ##
=======================================
  Coverage        ?   85.82%           
=======================================
  Files           ?      170           
  Lines           ?    12570           
  Branches        ?        0           
=======================================
  Hits            ?    10788           
  Misses          ?     1782           
  Partials        ?        0           

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azimov and others added 2 commits July 10, 2026 16:04
* implementation of custom end era logic in ibis layer with tests to confirm parity with circe-be implementation
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2 participants