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release merge #209

Merged
merged 172 commits into from
Mar 7, 2025
Merged

release merge #209

merged 172 commits into from
Mar 7, 2025

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stonecoldhughes
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Younkin T R and others added 30 commits August 23, 2024 10:48
changes to build dependencies after install test
eaefd29
updated circle example for tracking particle attributes
15a42bc
added reading of particle time histogram variables and generation of …
8db79cc 
…grid
example producing same results as postprocessing
2fafd0f
added checks in geometry file to ensure input file for multiple surfa…
da4af7e 
…ce time collection is working
add particle_diagnostics to build system
2890053
@hayes2419
Update gitr.cpp with ANGLE particle diagnostics
e6da697
@hayes2419
Update gitrInput.cfg of circle example to include part diag angle inputs
7deb73f 
added bin_edge_0_angle and bin_edge_1_angle to all be example angles that might or might not be useful; n_bins_angle was set to 100 arbitrarily
@hayes2419
Update particle_diagnostics.h with angle inputs
f50a235
@hayes2419
Update gitr.cpp to set ncDims and ncVars for ANGLE particle diagnostics
ed7fd82
@hayes2419
Update particle_diagnostics.cpp to initialize angle diagnostics
4d8c9a9 
actual work to append to the angle histogram still needs to be done, but will be less time-consuming with Tim tomorrow
@hayes2419
Update particle_diagnostics.cpp to include ANGLE histograms
23afaa4
@hayes2419
Update Particles.h to include transitAngle field
291a7ef
@hayes2419
Update particle_diagnostics.cpp to fix typos
6a95505
@hayes2419
Update particle_diagnostics.h to add in *_particle_angle_histogram
2d0ede5
@hayes2419
fix typos in gitr.cpp
73875f8
@hayes2419
Update particle_diagnostics.cpp to fix typo
00112aa
@hayes2419
Update gitr.cpp to fix problem with dims_part_hist
8dacb78 
was giving both n_bins_time and n_bins_angle to both time and angle histograms, instead of giving them independent sets of dimensions
@hayes2419
Update gitr.cpp to declare new dims varnames
2d13a24
@hayes2419
Update gitr.cpp to add perpDist to history.nc
88e7b71
@hayes2419
Update gitr.cpp to replace perpDist with perpDistanceToSurface
9d26620
@hayes2419
Update gitr.cpp to declare perpDistanceToSurface varnames
e75f44e
@hayes2419
Update history.h to include perpDistanceToSurface
74173ae
@hayes2419
Update history.h to fix typos
4056b39
@hayes2419
Update history.h to add perpDistanceToSurface declaration
e47e729
@hayes2419
Update boris.cpp to update perpDistanceToSurface field of particle ob…
ad686ad 
…ject
@hayes2419
Update boris.cpp hoping to fix typos
99ca116
@hayes2419
Update boris.cpp to replace storing perp_dist with minDist
94e229b
@hayes2419
populate perpDistanceToSurface field of history.nc (hopefully)
d3b6d3a
@hayes2419
Update particle_diagnostics.cpp to bin particles falling outside the …
bead7c7 
…bin ranges
null and others added 29 commits March 6, 2025 22:58
@stonecoldhughes
removed cylsymm from multiple functions
f438d19
@stonecoldhughes
removed cylsymm from thermalForce
5f6c3d0
@stonecoldhughes
removed cylsymm from reflection
62ce423
@stonecoldhughes
removed flowv_interp and cylsymm from coulombCollisions
279587f
@stonecoldhughes
removed cylsymm from ionize and recombine
b8dd979
@stonecoldhughes
removed geom_hash from geometry_check
0a4f1e0
@stonecoldhughes
removed geom_hash_sheath and leftover boris flags
495173e
@stonecoldhughes
added debug statement for atul
be947f9
@stonecoldhughes
remove old flags managed_allocation, test performance impact
0042eeb
@stonecoldhughes
debug printouts to identify slow file I/O
7aa762e
@stonecoldhughes
more debug prints
7b89aa0
@stonecoldhughes
debug statement
8e8836c
@stonecoldhughes
removed debug statements
217f59d
@stonecoldhughes
make surface_buffer smaller
a9ab275
@stonecoldhughes
Update README.md
38b8735 
add flags description
@stonecoldhughes
removed old flags include file from Particles.h
475504a
@stonecoldhughes
removed flags.hpp from all include files
1c12f87
@stonecoldhughes
removed flags from the build system
a5601d9
@stonecoldhughes
removed old flags structure from deactivated file_io_tests and surfac…
3e4012f 
…e_model_tests
@stonecoldhughes
removed gitr_flags references that were in comments
c512f81
@stonecoldhughes
removed old flags files
4d80f82
@stonecoldhughes
converted options: IONIZATION, USESHEATHEFIELD, SPECTROSCOPY,
889a192 
USE3DTETGEOM, USECYLSYMM
@stonecoldhughes
removed more options
6883a63
@stonecoldhughes
converted more options - see config_interface.h and compare
22e56b9 
across commits to see the changed options
@stonecoldhughes
more options changed - compare config_interface.h across commits
9cfb939
@stonecoldhughes
removed more options
d8e738c
@stonecoldhughes
finished renaming all options to be consistent with gitrInput.cfg
852572a
@stonecoldhughes
picked better name for flags class instances
823bfe7
@stonecoldhughes
renamed flags f to config_flags
b867497
@stonecoldhughes stonecoldhughes merged commit b867497 into main Mar 7, 2025
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2 participants
@stonecoldhughes @hayes2419