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Install
Olly Butters edited this page Aug 7, 2020
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Assuming a linux environment, it shouldn't matter too much which, but we've only developed/tested on recent versions of Ubuntu.
Clone or download from https://github.com/OllyButters/puma
Over and above your base python3 install you will need to have the following
- pyzotero
- biopython
- pandas
- jsonpath_rw
- nltk
- sparqlwrapper
which you can install using the requirements.txt file in the source folder with a command like:
pip3 install -r requirements.txt
Since we are using several APIs we need to register for a few of them and get some API keys.
- Zotero
- Scopus
Once you have the keys you need to place them in the configuration file and set the appropriate configuration settings. The guide for this can be found here.
Introduction
Install and run
Reference
Misc