Add TraitSimulation to the OpenMendel Tutorials page

TraitSimulation/Manifest.toml

@@ -0,0 +1,268 @@
+[[Arpack]]
+deps = ["BinaryProvider", "Libdl", "LinearAlgebra", "Random", "SparseArrays", "Test"]
+git-tree-sha1 = "1ce1ce9984683f0b6a587d5bdbc688ecb480096f"
+uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
+version = "0.3.0"
+
+[[Base64]]
+uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+
+[[BinDeps]]
+deps = ["Compat", "Libdl", "SHA", "URIParser"]
+git-tree-sha1 = "12093ca6cdd0ee547c39b1870e0c9c3f154d9ca9"
+uuid = "9e28174c-4ba2-5203-b857-d8d62c4213ee"
+version = "0.8.10"
+
+[[BinaryProvider]]
+deps = ["Libdl", "Pkg", "SHA", "Test"]
+git-tree-sha1 = "055eb2690182ebc31087859c3dd8598371d3ef9e"
+uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232"
+version = "0.5.3"
+
+[[CategoricalArrays]]
+deps = ["Compat", "Future", "Missings", "Printf", "Reexport", "Requires"]
+git-tree-sha1 = "94d16e77dfacc59f6d6c1361866906dbb65b6f6b"
+uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
+version = "0.5.2"
+
+[[CodecZlib]]
+deps = ["BinaryProvider", "Libdl", "Test", "TranscodingStreams"]
+git-tree-sha1 = "36bbf5374c661054d41410dc53ff752972583b9b"
+uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
+version = "0.5.2"
+
+[[Compat]]
+deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
+git-tree-sha1 = "84aa74986c5b9b898b0d1acaf3258741ee64754f"
+uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
+version = "2.1.0"
+
+[[DataFrames]]
+deps = ["CategoricalArrays", "CodecZlib", "Compat", "DataStreams", "Dates", "InteractiveUtils", "IteratorInterfaceExtensions", "LinearAlgebra", "Missings", "Printf", "Random", "Reexport", "SortingAlgorithms", "Statistics", "StatsBase", "TableTraits", "Tables", "Test", "TranscodingStreams", "Unicode", "WeakRefStrings"]
+git-tree-sha1 = "9cfed75401d25d281076eb5d82de148ac2933f9e"
+uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+version = "0.17.1"
+
+[[DataStreams]]
+deps = ["Dates", "Missings", "Test", "WeakRefStrings"]
+git-tree-sha1 = "69c72a1beb4fc79490c361635664e13c8e4a9548"
+uuid = "9a8bc11e-79be-5b39-94d7-1ccc349a1a85"
+version = "0.4.1"
+
+[[DataStructures]]
+deps = ["InteractiveUtils", "OrderedCollections", "Random", "Serialization", "Test"]
+git-tree-sha1 = "ca971f03e146cf144a9e2f2ce59674f5bf0e8038"
+uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
+version = "0.15.0"
+
+[[Dates]]
+deps = ["Printf"]
+uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
+
+[[DelimitedFiles]]
+deps = ["Mmap"]
+uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
+
+[[Distributed]]
+deps = ["LinearAlgebra", "Random", "Serialization", "Sockets"]
+uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
+
+[[Distributions]]
+deps = ["Distributed", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
+git-tree-sha1 = "dec0ebacfbc3a2126c614ab5e903c9ef063688d0"
+uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
+version = "0.17.0"
+
+[[Future]]
+deps = ["Random"]
+uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
+
+[[GLM]]
+deps = ["Distributions", "LinearAlgebra", "Printf", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "StatsModels"]
+git-tree-sha1 = "7c3f988031022a26b84c1a5106a5161c7a573960"
+uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a"
+version = "1.1.0"
+
+[[InteractiveUtils]]
+deps = ["LinearAlgebra", "Markdown"]
+uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
+
+[[IteratorInterfaceExtensions]]
+deps = ["Test"]
+git-tree-sha1 = "5484e5ede2a4137b9643f4d646e8e7b87b794415"
+uuid = "82899510-4779-5014-852e-03e436cf321d"
+version = "0.1.1"
+
+[[LibGit2]]
+uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
+
+[[Libdl]]
+uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
+
+[[LinearAlgebra]]
+deps = ["Libdl"]
+uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+
+[[Logging]]
+uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
+
+[[Markdown]]
+deps = ["Base64"]
+uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
+
+[[Missings]]
+deps = ["Dates", "InteractiveUtils", "SparseArrays", "Test"]
+git-tree-sha1 = "d1d2585677f2bd93a97cfeb8faa7a0de0f982042"
+uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
+version = "0.4.0"
+
+[[Mmap]]
+uuid = "a63ad114-7e13-5084-954f-fe012c677804"
+
+[[OrderedCollections]]
+deps = ["Random", "Serialization", "Test"]
+git-tree-sha1 = "85619a3f3e17bb4761fe1b1fd47f0e979f964d5b"
+uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
+version = "1.0.2"
+
+[[PDMats]]
+deps = ["Arpack", "LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"]
+git-tree-sha1 = "b6c91fc0ab970c0563cbbe69af18d741a49ce551"
+uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
+version = "0.9.6"
+
+[[Pkg]]
+deps = ["Dates", "LibGit2", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
+uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+
+[[Printf]]
+deps = ["Unicode"]
+uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
+
+[[QuadGK]]
+deps = ["DataStructures", "LinearAlgebra", "Test"]
+git-tree-sha1 = "3ce467a8e76c6030d4c3786e7d3a73442017cdc0"
+uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
+version = "2.0.3"
+
+[[REPL]]
+deps = ["InteractiveUtils", "Markdown", "Sockets"]
+uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
+
+[[Random]]
+deps = ["Serialization"]
+uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[[Reexport]]
+deps = ["Pkg"]
+git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0"
+uuid = "189a3867-3050-52da-a836-e630ba90ab69"
+version = "0.2.0"
+
+[[Requires]]
+deps = ["Test"]
+git-tree-sha1 = "f6fbf4ba64d295e146e49e021207993b6b48c7d1"
+uuid = "ae029012-a4dd-5104-9daa-d747884805df"
+version = "0.5.2"
+
+[[Rmath]]
+deps = ["BinaryProvider", "Libdl", "Random", "Statistics", "Test"]
+git-tree-sha1 = "9a6c758cdf73036c3239b0afbea790def1dabff9"
+uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
+version = "0.5.0"
+
+[[SHA]]
+uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
+
+[[Serialization]]
+uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
+
+[[SharedArrays]]
+deps = ["Distributed", "Mmap", "Random", "Serialization"]
+uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
+
+[[Sockets]]
+uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
+
+[[SortingAlgorithms]]
+deps = ["DataStructures", "Random", "Test"]
+git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd"
+uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
+version = "0.3.1"
+
+[[SparseArrays]]
+deps = ["LinearAlgebra", "Random"]
+uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+
+[[SpecialFunctions]]
+deps = ["BinDeps", "BinaryProvider", "Libdl", "Test"]
+git-tree-sha1 = "0b45dc2e45ed77f445617b99ff2adf0f5b0f23ea"
+uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
+version = "0.7.2"
+
+[[Statistics]]
+deps = ["LinearAlgebra", "SparseArrays"]
+uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+
+[[StatsBase]]
+deps = ["DataStructures", "DelimitedFiles", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "Test"]
+git-tree-sha1 = "435707791dc85a67d98d671c1c3fcf1b20b00f94"
+uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
+version = "0.29.0"
+
+[[StatsFuns]]
+deps = ["Rmath", "SpecialFunctions", "Test"]
+git-tree-sha1 = "b3a4e86aa13c732b8a8c0ba0c3d3264f55e6bb3e"
+uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
+version = "0.8.0"
+
+[[StatsModels]]
+deps = ["Compat", "DataFrames", "StatsBase", "Test"]
+git-tree-sha1 = "b5a735dcd2be05f0af86709750d4d5f62ca4a25d"
+uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d"
+version = "0.5.0"
+
+[[SuiteSparse]]
+deps = ["Libdl", "LinearAlgebra", "SparseArrays"]
+uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
+
+[[TableTraits]]
+deps = ["IteratorInterfaceExtensions", "Test"]
+git-tree-sha1 = "eba4b1d0a82bdd773307d652c6e5f8c82104c676"
+uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
+version = "0.4.1"
+
+[[Tables]]
+deps = ["IteratorInterfaceExtensions", "LinearAlgebra", "Requires", "TableTraits", "Test"]
+git-tree-sha1 = "719d5be11e89ae29d79b469c4238b63b53544d38"
+uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
+version = "0.1.18"
+
+[[Test]]
+deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
+uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[[TranscodingStreams]]
+deps = ["Pkg", "Random", "Test"]
+git-tree-sha1 = "f42956022d8084539f1d7219f632542b0ea686ce"
+uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
+version = "0.9.3"
+
+[[URIParser]]
+deps = ["Test", "Unicode"]
+git-tree-sha1 = "6ddf8244220dfda2f17539fa8c9de20d6c575b69"
+uuid = "30578b45-9adc-5946-b283-645ec420af67"
+version = "0.4.0"
+
+[[UUIDs]]
+deps = ["Random"]
+uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
+
+[[Unicode]]
+uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
+
+[[WeakRefStrings]]
+deps = ["Missings", "Random", "Test"]
+git-tree-sha1 = "960639a12ffd223ee463e93392aeb260fa325566"
+uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5"
+version = "0.5.8"

TraitSimulation/Project.toml

@@ -0,0 +1,12 @@
+name = "TraitSimulation"
+uuid = "dec3038e-29bc-11e9-2207-9f3d5855a202"
+authors = ["Sarah <[email protected]>"]
+version = "0.1.0"
+
+[deps]
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+GLM = "38e38edf-8417-5370-95a0-9cbb8c7f171a"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+StatsModels = "3eaba693-59b7-5ba5-a881-562e759f1c8d"