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PDBe EMBL-EBI

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  1. arpeggio arpeggio Public

    Calculation of interatomic interactions in molecular structures

    Python 91 20

  2. ccdutils ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    Python 56 8

  3. pdbe-api-training pdbe-api-training Public

    Interactive Python notebooks for PDBe API training

    Jupyter Notebook 52 19

  4. pdb-images pdb-images Public

    Generates images from mmCIF/BCIF files

    TypeScript 40 4

  5. pdbecif pdbecif Public

    A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

    Python 37 4

  6. PDBe_Programming PDBe_Programming Public

    PDBe Programming Interfaces information

    Jupyter Notebook 14 5

Repositories

Showing 10 of 40 repositories
  • InvestigationCIF Public

    Documentation for the mmcif Investigation dictionary

    PDBeurope/InvestigationCIF’s past year of commit activity
    1 CC0-1.0 1 0 0 Updated Apr 16, 2025
  • PDBeurope/surface-calculator’s past year of commit activity
    TypeScript 0 0 0 0 Updated Apr 16, 2025
  • BioSolr Public Forked from flaxsearch/BioSolr

    A project aiming "to significantly advance the state of the art with regard to indexing and querying biomedical data with freely available open source software"

    PDBeurope/BioSolr’s past year of commit activity
    Java 0 Apache-2.0 28 0 0 Updated Apr 2, 2025
  • Investigations Public

    This application is designed to create mmcif files from facilities data.

    PDBeurope/Investigations’s past year of commit activity
    Python 0 0 0 0 Updated Mar 28, 2025
  • ccdutils Public

    A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit

    PDBeurope/ccdutils’s past year of commit activity
    Python 56 Apache-2.0 8 1 1 Updated Mar 6, 2025
  • protein-cluster-conformers Public

    Clusters protein chains based on CA distance difference

    PDBeurope/protein-cluster-conformers’s past year of commit activity
    Python 14 0 0 1 Updated Feb 4, 2025
  • pdbe-api-training Public

    Interactive Python notebooks for PDBe API training

    PDBeurope/pdbe-api-training’s past year of commit activity
    Jupyter Notebook 52 19 0 2 Updated Jan 10, 2025
  • PDBeurope/pdbe-notebooks’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Jan 10, 2025
  • heatmap-component Public

    Canvas-based Interactive Heatmap Component

    PDBeurope/heatmap-component’s past year of commit activity
    TypeScript 2 Apache-2.0 0 0 0 Updated Dec 19, 2024
  • rellig Public
    PDBeurope/rellig’s past year of commit activity
    Python 7 Apache-2.0 0 1 0 Updated Oct 31, 2024

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