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fix viash 0.9 refactoring (#79) #1

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fix viash 0.9 refactoring (#79)

fix viash 0.9 refactoring (#79) #1

Triggered via push January 28, 2025 16:36
@Paulos2411Paulos2411
pushed 2fa4446
main
Status Failure
Total duration 7m 22s
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build.yaml

on: push
build  /  Build target branch
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27 errors
build / Build (generate_id_map, process_dataset, executable, docker, src/process_dataset/generate_id_map/...
Process completed with exit code 1.
build / Build (mean_rowwise_error, metrics, executable, docker, src/metrics/mean_rowwise_error/config.vsh...
Process completed with exit code 1.
build / Build (mean_rowwise_correlation, metrics, executable, docker, src/metrics/mean_rowwise_correlatio...
Process completed with exit code 1.
build / Build (mean_outcome, control_methods, executable, docker, src/control_methods/mean_outcome/config...
Process completed with exit code 1.
build / Build (compute_pseudobulk, process_dataset, executable, docker, src/process_dataset/compute_pseud...
Process completed with exit code 1.
build / Build (convert_kaggle_h5ad_to_parquet, process_dataset, executable, docker, src/process_dataset/c...
Process completed with exit code 1.
build / Build (add_uns_metadata, process_dataset, executable, docker, src/process_dataset/add_uns_metadat...
Process completed with exit code 1.
build / Build (bootstrap, process_dataset, executable, docker, src/process_dataset/bootstrap/config.vsh.y...
Process completed with exit code 1.
build / Build (convert_h5ad_to_parquet, process_dataset, executable, docker, src/process_dataset/convert_...
Process completed with exit code 1.
build / Build (mean_across_celltypes, control_methods, executable, docker, src/control_methods/mean_acros...
Process completed with exit code 1.
build / Build (filter_obs, process_dataset, executable, docker, src/process_dataset/filter_obs/config.vsh...
Process completed with exit code 1.
build / Build (filter_vars, process_dataset, executable, docker, src/process_dataset/filter_vars/config.v...
Process completed with exit code 1.
build / Build (ground_truth, control_methods, executable, docker, src/control_methods/ground_truth/config...
Process completed with exit code 1.
build / Build (mean_across_compounds, control_methods, executable, docker, src/control_methods/mean_acros...
Process completed with exit code 1.
build / Build (run_limma, process_dataset, executable, docker, src/process_dataset/run_limma/config.vsh.y...
Process completed with exit code 1.
build / Build (sample, control_methods, executable, docker, src/control_methods/sample/config.vsh.yaml, t...
Process completed with exit code 1.
build / Build (split_sc, process_dataset, executable, docker, src/process_dataset/split_sc/config.vsh.yam...
Process completed with exit code 1.
build / Build (zeros, control_methods, executable, docker, src/control_methods/zeros/config.vsh.yaml, tar...
Process completed with exit code 1.
build / Build (nn_retraining_with_pseudolabels, methods, executable, docker|native, src/methods/nn_retrai...
Process completed with exit code 1.
build / Build (jn_ap_op2, methods, executable, docker|native, src/methods/jn_ap_op2/config.vsh.yaml, targ...
Process completed with exit code 1.
build / Build (scape, methods, executable, docker, src/methods/scape/config.vsh.yaml, target/executable/m...
Process completed with exit code 1.
build / Build (pyboost, methods, executable, docker|native, src/methods/pyboost/config.vsh.yaml, target/e...
Process completed with exit code 1.
build / Build (lgc_ensemble_prepare, methods, executable, docker|native, src/methods/lgc_ensemble_prepare...
Process completed with exit code 1.
build / Build (lgc_ensemble_direct, methods, executable, docker|native, src/methods/lgc_ensemble_direct/c...
Process completed with exit code 1.
build / Build (lgc_ensemble_predict, methods, executable, docker|native, src/methods/lgc_ensemble_predict...
Process completed with exit code 1.
build / Build (lgc_ensemble_train, methods, executable, docker|native, src/methods/lgc_ensemble_train/con...
Process completed with exit code 1.
build / Build (transformer_ensemble, methods, executable, docker, src/methods/transformer_ensemble/config...
Process completed with exit code 1.