v1.3.7

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: fluxible
 Title: Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup
-Version: 1.3.6
-Date: 2026-02-05
+Version: 1.3.7
+Date: 2026-03-17
 Authors@R: 
     c(person(given = "Joseph", family = "Gaudard", , "joseph.gaudard@pm.me", role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6989-7624")),

NEWS.md

@@ -1,3 +1,7 @@
+# fluxible 1.3.7
+
+* `flux_plot`: argument `arrange_col` allows to customize the order of the facets
+
 # fluxible 1.3.6
 
 * fixed the use of `case_when()` to avoid warnings with `dplyr 1.2.0`.

R/flux_fortify.R

@@ -22,7 +22,8 @@ flux_fortify <- function(slopes_df,
                          f_ylim_upper,
                          f_ylim_lower,
                          f_facetid,
-                         y_text_position) {
+                         y_text_position,
+                         arrange_col) {
 
   args_ok <- flux_fun_check(list(
     f_ylim_upper = f_ylim_upper,
@@ -44,6 +45,7 @@ flux_fortify <- function(slopes_df,
     select(
       {{f_conc}},
       {{f_datetime}},
+      {{arrange_col}},
       all_of(f_facetid),
       any_of(c(
         "f_quality_flag",
@@ -108,14 +110,19 @@ flux_fortify <- function(slopes_df,
   nb_fluxid <- n_distinct(slopes_df$f_fluxid)
 
   # customize facet ID
+
   slopes_df <- slopes_df |>
     unite(
       col = "f_facetid",
       all_of(f_facetid),
-      sep = " "
+      sep = " ",
+      remove = FALSE
     ) |>
+    arrange({{arrange_col}}, {{f_datetime}}) |>
     mutate(
-      f_facetid = fct_reorder(f_facetid, {{f_datetime}})
+      .by = "f_facetid",
+      rowid = cur_group_id(),
+      f_facetid = fct_reorder(f_facetid, .data$rowid)
     )
 
   # testing if f_facetid is unique, otherwise facet will make a mess

R/flux_plot.R

@@ -40,6 +40,8 @@
 #' measurement. Default is `f_fluxid`
 #' @param longpdf_args arguments for longpdf in the form
 #' `list(ncol, width (in cm), ratio)`
+#' @param arrange_col character vector of columns to use to reorder the facets.
+#' If NULL (default), facets are ordered by the datetime of the measurement.
 #' @return plots of fluxes, with raw concentration data points, fit, slope,
 #' and color code indicating quality flags and cuts. The plots are organized
 #' in facets according to flux ID, and a text box display the quality flag and
@@ -99,17 +101,21 @@ flux_plot <- function(slopes_df,
                       y_text_position = 500,
                       print_plot = "FALSE",
                       output = "print_only",
-                      ggsave_args = list()) {
+                      ggsave_args = list(),
+                      arrange_col = c()) {
 
   # fortify data
+
+
   slopes_params <- flux_fortify(
     slopes_df = slopes_df,
     f_conc = {{f_conc}},
     f_datetime = {{f_datetime}},
     f_ylim_upper = f_ylim_upper,
     f_ylim_lower = f_ylim_lower,
     f_facetid = f_facetid,
-    y_text_position = y_text_position
+    y_text_position = y_text_position,
+    arrange_col = {{arrange_col}}
   )
   slopes_df <- slopes_params$slopes_df
 

README.Rmd

@@ -128,6 +128,10 @@ fluxes_gpp
 
 The [`licoread` R package](https://jogaudard.github.io/licoread/index.html), developed in collaboration with [LI-COR](https://www.licor.com/), provides an easy way to import raw files from LI-COR gas analyzers as R objects that can be used directly with the `fluxible` R package.
 
+### `readosense` R package
+
+The [`readosense` R package](https://jogaudard.github.io/readosense/index.html) provides an easy way to import raw files from [Eosense](https://eosense.com/) multi chamber ecosystem gas flux setups as R objects that can be used directly with the `fluxible` R package.
+
 ## Further developments
 
 ### Segmentation tool

README.md

@@ -196,6 +196,14 @@ collaboration with [LI-COR](https://www.licor.com/), provides an easy
 way to import raw files from LI-COR gas analyzers as R objects that can
 be used directly with the `fluxible` R package.
 
+### `readosense` R package
+
+The [`readosense` R
+package](https://jogaudard.github.io/readosense/index.html) provides an
+easy way to import raw files from [Eosense](https://eosense.com/) multi
+chamber ecosystem gas flux setups as R objects that can be used directly
+with the `fluxible` R package.
+
 ## Further developments
 
 ### Segmentation tool

dev/dev.R

@@ -27,7 +27,7 @@ devtools::load_all()
 # autoimport::autoimport()
 
 devtools::document()
-devtools::test(filter = "flux_calc")
+devtools::test(filter = "flux_plot")
 devtools::test()
 devtools::run_examples()
 devtools::check()