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Update unstructured CMake configuration #105

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136 changes: 91 additions & 45 deletions unstructured/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -15,15 +15,9 @@ endif("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}")
list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake")

if(NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE Release)
set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build." FORCE)
endif()

# set(CMAKE_FIND_LIBRARY_SUFFIXES ".a" ".so")
# if(BUILD_SHARED_LIBS)
# set(CMAKE_FIND_LIBRARY_SUFFIXES ".so" ".a")
# endif()
message(STATUS "Found PETSc ${CMAKE_FIND_LIBRARY_SUFFIXES}")

# set(CMAKE_CXX_FLAGS "-Wall -Wextra")
# set(CMAKE_CXX_FLAGS_DEBUG "-g")
# set(CMAKE_CXX_FLAGS_RELEASE "-O3")
Expand All @@ -37,7 +31,7 @@ set(SOURCES
scorec_vector.f90
scorec_matrix.f90
scorec_adapt.f90
PETScInterface.cpp
# PETScInterface.cpp
physical_mesh.f90
read_vmec.f90
fftw_fortran.c
Expand All @@ -54,6 +48,7 @@ set(SOURCES
read_gyro.f90
read_neo.f90
region.f90
signal_handler.f90
radiation.f90
element.f90
field.f90
Expand Down Expand Up @@ -162,8 +157,10 @@ find_package(PkgConfig REQUIRED)

# pkg_check_modules (PETSC REQUIRED PETSc)
pkg_search_module(PETSC PETSc IMPORTED_TARGET REQUIRED)
message(STATUS "Found PETSc ${PETSC_VERSION}")
message(STATUS "Found PETSc ${CMAKE_Fortran_COMPILER_ID}")
message(STATUS "PETSc version: ${PETSC_VERSION}")
message(STATUS "PETSc prefix: ${PETSC_PREFIX}")
message(STATUS "PETSc include dirs: ${PETSC_INCLUDE_DIRS}")
message(STATUS "PETSc library dirs: ${PETSC_LIBRARY_DIRS}")

# foreach(ITR ${PETSC_LINK_LIBRARIES})
# if(ITR MATCHES "liblapack\.a")
Expand All @@ -179,8 +176,10 @@ message(STATUS "Found PETSc ${CMAKE_Fortran_COMPILER_ID}")
# list(INSERT PETSC_LINK_LIBRARIES ${IDX} ${LAPACK_LIBRARY})
# message(STATUS "Found PETSc ${PETSC_STATIC_LIBRARIES}")
set(PETSC_LINK_LIBRARIES "")
set(PETSC_LINK_OPTIONS "")
set(_petsc_search_paths "")
# message(STATUS "Found PETSc ${PETSC_LINK_LIBRARIES}")
message(STATUS "Found PETSc ${PETSC_STATIC_LDFLAGS}")
message(STATUS "PETSc static link flags from pkg-config: ${PETSC_STATIC_LDFLAGS}")
# list(FIND PETSC_STATIC_LDFLAGS "-lmetis" _index)
# math(EXPR _index "${_index}+1")
# message(STATUS "Found PETSc ${_index}")
Expand All @@ -192,43 +191,57 @@ message(STATUS "Found PETSc ${PETSC_STATIC_LDFLAGS}")
# endif()
foreach (flag IN LISTS PETSC_STATIC_LDFLAGS)
if (flag MATCHES "^-L(.*)")
list(APPEND _search_paths ${CMAKE_MATCH_1})
list(APPEND _petsc_search_paths "${CMAKE_MATCH_1}")
continue()
endif()

if (flag MATCHES "^-l(.*)")
set(_pkg_search "${CMAKE_MATCH_1}")
endif()

# if (${_pkg_search} IN_LIST STATIC_LIST)
# message(STATUS "Found PETSc ${_pkg_search}")
# set(_pkg_search "lib${_pkg_search}.a")
# endif()
# if (${_pkg_search} IN_LIST STATIC_LIST)
# message(STATUS "Found PETSc ${_pkg_search}")
# set(_pkg_search "lib${_pkg_search}.a")
# endif()

if(_search_paths)
if(_petsc_search_paths)
# Firstly search in -L paths
find_library(pkgcfg_lib_PETSC_${_pkg_search}
NAMES ${_pkg_search}
HINTS ${_search_paths} NO_DEFAULT_PATH)
endif()
find_library(pkgcfg_lib_PETSC_${_pkg_search}
NAMES ${_pkg_search})
if(pkgcfg_lib_PETSC_${_pkg_search})
list(APPEND PETSC_LINK_LIBRARIES "${pkgcfg_lib_PETSC_${_pkg_search}}")
HINTS ${_petsc_search_paths} NO_DEFAULT_PATH)
endif()
find_library(pkgcfg_lib_PETSC_${_pkg_search}
NAMES ${_pkg_search})
if(pkgcfg_lib_PETSC_${_pkg_search})
list(APPEND PETSC_LINK_LIBRARIES "${pkgcfg_lib_PETSC_${_pkg_search}}")
else()
list(APPEND PETSC_LINK_LIBRARIES ${_pkg_search})
endif()
elseif(flag MATCHES "^/.+\\.(a|so|dylib)$")
list(APPEND PETSC_LINK_LIBRARIES "${flag}")
elseif(flag MATCHES "^-")
list(APPEND PETSC_LINK_OPTIONS "${flag}")
else()
list(APPEND PETSC_LINK_LIBRARIES ${_pkg_search})
list(APPEND PETSC_LINK_LIBRARIES "${flag}")
endif()
endforeach()
# message(STATUS "Found PETSc ${PETSC_LIBRARIES}")
message(STATUS "Found PETSc ${PETSC_LINK_LIBRARIES}")
message(STATUS "PETSc link libraries: ${PETSC_LINK_LIBRARIES}")
message(STATUS "PETSc link options: ${PETSC_LINK_OPTIONS}")
# list(TRANSFORM PETSC_LINK_LIBRARIES REPLACE "libpthread\.a" "libpthread.so")
# list(FILTER PETSC_LINK_LIBRARIES EXCLUDE REGEX "libpthread")
list(FILTER PETSC_LINK_LIBRARIES EXCLUDE REGEX "libcuda\.so")
# list(FILTER PETSC_LINK_LIBRARIES EXCLUDE REGEX "libsci_cray\.a")
# list(REMOVE_DUPLICATES PETSC_LINK_LIBRARIES)
list(REMOVE_DUPLICATES PETSC_LINK_LIBRARIES)
list(REMOVE_DUPLICATES PETSC_LINK_OPTIONS)
set_property(TARGET PkgConfig::PETSC PROPERTY
INTERFACE_LINK_LIBRARIES "${PETSC_LINK_LIBRARIES}")
if(PETSC_LINK_OPTIONS)
set_property(TARGET PkgConfig::PETSC PROPERTY
INTERFACE_LINK_OPTIONS "${PETSC_LINK_OPTIONS}")
endif()

pkg_search_module(FFTW fftw3 IMPORTED_TARGET REQUIRED)
message(STATUS "Found fftw3 ${FFTW_LINK_LIBRARIES}")

pkg_search_module(GSL gsl IMPORTED_TARGET REQUIRED)
# list(FILTER GSL_LINK_LIBRARIES EXCLUDE REGEX "libm")
Expand All @@ -243,7 +256,8 @@ message(STATUS "Found gsl ${GSL_LINK_LIBRARIES}")
# set(POSTFIX "${POSTFIX}-trilinos")
# endif()

find_package(Scorec)
find_package(Zoltan REQUIRED)
find_package(Scorec REQUIRED)
# if(SCOREC_FOUND AND USESCOREC)
# if(TRILINOS_FOUND AND USETRILINOS)
# set(SCOREC_SOURCES
Expand Down Expand Up @@ -272,29 +286,65 @@ find_package(Scorec)
# list(APPEND DEFS -DMATRIX_DUMP)
# endif()

find_package(Zoltan)
#find_package(PARMETIS)
#find_package(METIS)

find_package(ZLIB)
message(STATUS "ZLIB found: ${ZLIB_LIBRARIES}")
set(HDF5_PREFER_PARALLEL ON)
find_package(HDF5 REQUIRED COMPONENTS Fortran HL)
message(STATUS "HDF5 found: ${HDF5_HL_LIBRARIES}")
if (HDF5_HL_LIBRARIES MATCHES "libhdf5_hl_fortran\.a")
set(HDF5_USE_STATIC_LIBRARIES TRUE)
find_package(HDF5 REQUIRED COMPONENTS Fortran HL)
message(STATUS "HDF5 found: ${HDF5_HL_LIBRARIES}")
endif()
if (HDF5_FOUND)
message(STATUS "HDF5 found: ${HDF5_VERSION}")
message(STATUS "HDF5 version: ${HDF5_VERSION}")
else ()
message(FATAL_ERROR "HDF5 not found.")
endif ()
message(STATUS "HDF5_IS_PARALLEL = ${HDF5_IS_PARALLEL}")
message(STATUS "HDF5_INCLUDE_DIRS = ${HDF5_INCLUDE_DIRS}")
message(STATUS "HDF5_LIBRARIES = ${HDF5_LIBRARIES}")

find_package(netCDF
HINTS ${CMAKE_PREFIX_PATH}
PATHS /usr /usr/local
PATH_SUFFIXES
cmake/netCDF_mpi
lib/cmake/netCDF_mpi
lib64/cmake/netCDF_mpi
lib/${CMAKE_LIBRARY_ARCHITECTURE}/cmake/netCDF_mpi
NO_DEFAULT_PATH)
if(NOT netCDF_FOUND)
find_package(netCDF)
endif()
if(netCDF_FOUND)
if(TARGET netCDF::netcdf)
set(M3DC1_NETCDF_TARGET netCDF::netcdf)
get_target_property(M3DC1_NETCDF_INTERFACE_LINK_LIBRARIES netCDF::netcdf INTERFACE_LINK_LIBRARIES)
else()
set(M3DC1_NETCDF_TARGET ${netCDF_LIBRARIES})
set(M3DC1_NETCDF_INTERFACE_LINK_LIBRARIES ${netCDF_LIBRARIES})
endif()
message(STATUS "Found NetCDF CMake config: ${netCDF_DIR}")
message(STATUS "Found NetCDF ${NetCDFVersion}")
message(STATUS "NetCDF include dirs: ${netCDF_INCLUDE_DIR}")
message(STATUS "NetCDF libraries: ${M3DC1_NETCDF_TARGET}")
message(STATUS "NetCDF interface link libraries: ${M3DC1_NETCDF_INTERFACE_LINK_LIBRARIES}")
else()
pkg_search_module(NETCDF netcdf-mpi netcdf IMPORTED_TARGET REQUIRED)
set(M3DC1_NETCDF_TARGET PkgConfig::NETCDF)
message(STATUS "Found NetCDF ${NETCDF_VERSION}")
message(STATUS "Found NetCDF module: ${NETCDF_MODULE_NAME}")
message(STATUS "NetCDF include dirs: ${NETCDF_INCLUDE_DIRS}")
message(STATUS "NetCDF libraries: ${NETCDF_LINK_LIBRARIES}")
endif()

pkg_search_module(NETCDF netcdf IMPORTED_TARGET REQUIRED)
message(STATUS "Found NetCDF ${NETCDF_VERSION}")
pkg_search_module(NETCDF-Fortran netcdf-fortran IMPORTED_TARGET REQUIRED)
set(M3DC1_NETCDF_FORTRAN_TARGET PkgConfig::NETCDF-Fortran)
message(STATUS "Found NetCDF-Fortran ${NETCDF-Fortran_VERSION}")
message(STATUS "Found NetCDF-Fortran module: ${NETCDF-Fortran_MODULE_NAME}")
message(STATUS "NetCDF-Fortran include dirs: ${NETCDF-Fortran_INCLUDE_DIRS}")
message(STATUS "NetCDF-Fortran libraries: ${NETCDF-Fortran_LINK_LIBRARIES}")

# find_package(netCDF-Fortran REQUIRED)
# if (netCDF_FOUND)
Expand Down Expand Up @@ -396,8 +446,7 @@ set_source_files_properties(
set_source_files_properties(
field.f90
PROPERTIES
OBJECT_DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${BIN_NAME}.dir/scorec_vector.f90.o
OBJECT_DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${BIN_NAME}.dir/scorec_matrix.f90.o
OBJECT_DEPENDS "${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${BIN_NAME}.dir/scorec_vector.f90.o;${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${BIN_NAME}.dir/scorec_matrix.f90.o"
)

set_source_files_properties(
Expand All @@ -423,8 +472,8 @@ endif()
add_executable(${BIN_NAME} ${SOURCES})
# set_target_properties(${BIN_NAME} PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/${BIN_NAME}_mods)
set_property(TARGET ${BIN_NAME} PROPERTY LINKER_LANGUAGE Fortran)
target_include_directories(${BIN_NAME} PRIVATE ${SCOREC_INCLUDE_DIRS})
target_link_libraries(${BIN_NAME} PRIVATE PkgConfig::NETCDF-Fortran PkgConfig::NETCDF
target_include_directories(${BIN_NAME} PRIVATE ${SCOREC_INCLUDE_DIRS} ${ZOLTAN_INCLUDE_DIRS} ${HDF5_INCLUDE_DIRS})
target_link_libraries(${BIN_NAME} PRIVATE ${M3DC1_NETCDF_FORTRAN_TARGET} ${M3DC1_NETCDF_TARGET}
${HDF5_HL_LIBRARIES} ${HDF5_LIBRARIES}
# netCDF::netcdff
${M3DC1_SCOREC_LIB_NAME} ${SCOREC_LIBRARIES} ${ZOLTAN_LIBRARIES}
Expand All @@ -447,9 +496,9 @@ install(TARGETS ${BIN_NAME} DESTINATION ".")
# INTERFACE_LINK_LIBRARIES)
list(FILTER CMAKE_C_IMPLICIT_LINK_LIBRARIES EXCLUDE REGEX "^c$")
list(FILTER CMAKE_CXX_IMPLICIT_LINK_LIBRARIES EXCLUDE REGEX "^c$")
message(STATUS ${CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES})
message(STATUS ${CMAKE_C_IMPLICIT_LINK_LIBRARIES})
message(STATUS ${CMAKE_CXX_IMPLICIT_LINK_LIBRARIES})
message(STATUS "Fortran implicit link libraries: ${CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES}")
message(STATUS "C implicit link libraries: ${CMAKE_C_IMPLICIT_LINK_LIBRARIES}")
message(STATUS "CXX implicit link libraries: ${CMAKE_CXX_IMPLICIT_LINK_LIBRARIES}")
# set(CMAKE_Fortran_IMPLICIT_LINK_LIBRARIES "")
# set(CMAKE_C_IMPLICIT_LINK_LIBRARIES "")
# set(CMAKE_CXX_IMPLICIT_LINK_LIBRARIES "")
Expand Down Expand Up @@ -482,6 +531,3 @@ endif()
#target_compile_definitions(a2cc PUBLIC ${DEFS})

#add_executable(kprad kprad.f90 kprad_test.f90)