Merge pull request #93 from Robaina/Robaina/issue71 #169
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| name: tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| paths-ignore: | |
| - '**.md' | |
| - '**.ipynb' | |
| - '**.bib' | |
| - 'ms/*' | |
| pull_request: | |
| types: [opened, reopened, edited] | |
| paths-ignore: | |
| - '**.md' | |
| - '**.ipynb' | |
| - '**.bib' | |
| - 'ms/*' | |
| jobs: | |
| create-env: | |
| name: ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: create environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: 3.8 | |
| # mamba-version: "*" | |
| channels: conda-forge,bioconda,defaults | |
| auto-activate-base: false | |
| activate-environment: tests_pynteny | |
| environment-file: envs/pynteny-dev.yml | |
| - name: Build & Install Pynteny | |
| run: poetry build && pip install dist/pynteny*.whl | |
| - name: Run tests and collect coverage | |
| run: pynteny --help && coverage run --omit pynteny/wrappers.py,pynteny/cli.py,pynteny/subcommands.py,pynteny/utils.py -m unittest discover tests && coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| version: "v0.1.15" |