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@SciCrunch

FDI Laboratory

FAIR Data Informatics Laboratory at the University of California, San Diego developing the SciCrunch.org infrastructure

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  1. NIF-Ontology NIF-Ontology Public

    NIF Standard Ontologies (NIFSTD)

    54 17

  2. scibot scibot Public

    curation workflow automation and coordination

    Python 42 12

  3. sparc-curation sparc-curation Public

    code and files for SPARC curation workflows

    Python 14 13

  4. bio-answerfinder bio-answerfinder Public

    A question answering system for biomedical literature

    Java 9

  5. Antibody-Watch Antibody-Watch Public

    Antibody Watch: Text Mining Antibody Specificity from the Literature

    Jupyter Notebook 7 1

  6. bio_electra bio_electra Public

    Bio-Electra - Small and efficient discriminatively pre-trained language representation models for biomedical text mining

    Python 4 1

Repositories

Showing 10 of 31 repositories
  • RRID-Instruments Public

    Location for RRID instrument documentation

    0 0 0 0 Updated Apr 22, 2025
  • sparc-curation Public

    code and files for SPARC curation workflows

    Python 14 MIT 13 50 1 Updated Apr 22, 2025
  • quantitative-db Public

    A flexible database for storing arbitrary quantitative measurements

    Python 0 MIT 0 6 1 Updated Apr 1, 2025
  • Foundry-Docs Public

    Gitbook repository for Foundry ecosystem documentation

    0 0 1 0 Updated Mar 19, 2025
  • sckan-query-examples Public
    Jupyter Notebook 0 0 1 0 Updated Mar 9, 2025
  • NIF-Ontology Public

    NIF Standard Ontologies (NIFSTD)

    54 CC-BY-4.0 17 148 4 Updated Feb 18, 2025
  • scibot Public

    curation workflow automation and coordination

    Python 42 Apache-2.0 12 23 1 Updated Jan 31, 2025
  • API-Handbook-Docs Public

    Repository for API Handbook Gitbook

    0 0 0 0 Updated Jan 16, 2025
  • SPARC-Citations Public

    Scripts to aggregate SPARC Citation information

    Python 0 0 4 0 Updated Jan 14, 2025
  • SciGraph Public Forked from SciGraph/SciGraph

    A Neo4j backed ontology store

    Java 0 Apache-2.0 49 0 1 Updated Dec 19, 2024
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