Bump the all-julia-packages group across 1 directory with 12 updates

[dependabot]

Updates the requirements on Distributions, ChainRulesCore, PDMats, RecursiveArrayTools, DiffEqBase, DifferenceEquations, Plots, Zygote, DataFrames, FiniteDiff, DelimitedFiles and ChainRulesTestUtils to permit the latest version.
Updates Distributions to 0.25.125

Release notes

Sourced from Distributions's releases.

v0.25.125

Distributions v0.25.125

Diff since v0.25.124

Merged pull requests:

• Add sufficient statistics and MLE for Chi and Chisq (#1997) (@​devmotion)

Commits

• cc1a9fa Add sufficient statistics and MLE for Chi and Chisq (#1997)
• 46ef6a3 Fix BinomialTPESampler Stirling correction sign error (#2053)
• da420cd Implementing Hypergeometric sampling to remove RFunctions dependency (#1994)
• 196d79b Bump codecov/codecov-action from 5 to 6 (#2048)
• 8c7dd0d Simplify pdf formula in SkewNormal docstring (#2046)
• bd05c70 Bump julia-actions/cache from 2 to 3 (#2043)
• aaa6f49 Add docstring for univariate gradlogpdf (#2042)
• 71309bc Bump actions/checkout from 5 to 6 (#2037)
• d90e7ab Fix R test references and make them reproducible (#2007)
• f1ff9e8 minor numerical improvement to logpdf(::Skellam) (#2034)
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Updates ChainRulesCore to 1.26.1

Release notes

Sourced from ChainRulesCore's releases.

v1.26.1

What's Changed

• Bump actions/checkout from 4 to 5 by @​dependabot[bot] in JuliaDiff/ChainRulesCore.jl#699
• Bump actions/checkout from 5 to 6 by @​dependabot[bot] in JuliaDiff/ChainRulesCore.jl#700
• Bump codecov/codecov-action from 5 to 6 by @​dependabot[bot] in JuliaDiff/ChainRulesCore.jl#705
• Fix some tests and bump version by @​JamesWrigley in JuliaDiff/ChainRulesCore.jl#706

New Contributors

• @​JamesWrigley made their first contribution in JuliaDiff/ChainRulesCore.jl#706

Full Changelog: JuliaDiff/ChainRulesCore.jl@v1.26.0...v1.26.1

Commits

• 4253bff Fix some tests and bump version (#706)
• dad0d24 Bump codecov/codecov-action from 5 to 6 (#705)
• 004e43e Bump actions/checkout from 5 to 6 (#700)
• 115c282 Bump actions/checkout from 4 to 5 (#699)
• 414b660 Update Project.toml
• 124e0cb Merge pull request #698 from ChrisRackauckas-Claude/update-compat-bounds-2025
• 1d5c651 Update Downgrade.yml
• 6facda3 Create Downgrade.yml
• 632c0dc Update compat bounds to exclude releases >1 year old
• f396d36 Merge pull request #697 from ChrisRackauckas-Claude/bump-julia-v1.10
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Updates PDMats to 0.11.37

Release notes

Sourced from PDMats's releases.

v0.11.37

PDMats v0.11.37

Diff since v0.11.36

Merged pull requests:

• Remove CI tests on Intel macs (#225) (@​devmotion)
• Bump actions/checkout from 5 to 6 (#226) (@​dependabot[bot])
• Support ldiv!(::AbstractPDMat, b) (#228) (@​timholy)

Commits

• 61c65b1 Support ldiv!(::AbstractPDMat, b) (#228)
• 4aaf961 Bump actions/checkout from 5 to 6 (#226)
• 5046635 Remove CI tests on Intel macs (#225)
• dc25bc6 Bump version from 0.11.35 to 0.11.36
• 4e408fe Add StatsBase extension for cov2cor and cor2cov (#223)
• fa0763d Bump actions/checkout from 4 to 5 (#224)
• 508d717 Merge pull request #221 from JuliaStats/dw/invwhiten_invunwhiten
• b4c2257 Add invwhiten and invunwhiten
• 7b61f73 Format with Runic (#220)
• dbeb7c7 Merge pull request #217 from JuliaStats/dw/three_arg_mul_ldiv
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Updates RecursiveArrayTools to 4.2.0

Release notes

Sourced from RecursiveArrayTools's releases.

v4.2.0

RecursiveArrayTools v4.2.0

Diff since v4.1.0

Merged pull requests:

• Update CUDA requirement from 5 to 5, 6.0 in the all-julia-packages group across 1 directory (#578) (@​dependabot[bot])
• Preserve container type in zero(VectorOfArray) via rewrap (#579) (@​ChrisRackauckas-Claude)
• Update Project.toml (#580) (@​ChrisRackauckas)

Commits

• 6a720b5 Merge pull request #580 from SciML/ChrisRackauckas-patch-3
• fd39380 Update Project.toml
• fea7a20 Merge pull request #579 from ChrisRackauckas-Claude/fix-zero-structarray
• 5ddceee Add test for zero(VectorOfArray) preserving StructArray container type
• 273a065 Preserve container type in zero(VectorOfArray) via rewrap
• 25b5e64 Merge pull request #578 from SciML/dependabot/julia/all-julia-packages-629bbb...
• f4f840b Update CUDA requirement 6.0
• 9277c46 Merge pull request #576 from SciML/ChrisRackauckas-patch-3
• ccc3e73 Update Project.toml
• a22d73a Merge pull request #575 from ChrisRackauckas-Claude/mooncake-arraypartition-r...
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Updates DiffEqBase to 6.218.0

Commits

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Updates DifferenceEquations to 1.0.0

Commits

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Updates Plots to 1.41.6

Release notes

Sourced from Plots's releases.

Plots-v1.41.6

What's Changed

• fix histogram using ranges by @​t-bltg in JuliaPlots/Plots.jl#5636

Full Changelog: JuliaPlots/Plots.jl@Plots-v1.41.5+docs...Plots-v1.41.6

Changelog

Sourced from Plots's changelog.

Plots.jl NEWS

Breaking changes

---

v2

• deprecated backends pgfplots and pyplot removed
• deprecated keyword orientation removed
• backends are extensions now so the backend code must be explicitly loaded using import with the backend package, e.g.

  using Plots
  import GR # loads backend code

• Types are no longer part of the Plots API this affects
  • Shape, which is now shape
• The default label is now :none, use :auto to restore the previous behaviour
• UnitfulExt changes:
  • The P_str macro is no longer provided as API. The intended goal was simply to not put units on axis labels which were "protected strings". To achieve this now, pass unitformat=:nounit.
  • The axis option unitformat=:none, unitformat=nothing, and unitformat=false previously printed the axis guide as string(label, " ", unit). That behavior is now moved to unitformat=:space, and :none, nothing, and false print the axis guide without units.

---

notes on release changes, ongoing development, and future planned work

NOTE: this file is deprecated, see the TagBot auto-generated changelogs instead

0.28.3

• support generalized array interface
• save to pdf, svg and eps in plotlyjs
• fix for clims in line_z
• optimize heatmap logic in gr

0.26.3

• fix vline with dates
• fix PyPlot logscale bug
• avoid annotation clipping for PyPlot
• allow plotting of Any vectors and 3D plotting again in convertToAnyVector
• specify legend title font in GR and PyPlot
• delete pushtomaster.sh
• use === nothing

0.26.2

• improve empty animation build error

... (truncated)

Commits

• 3165bad Plots 1.41.6 [skip ci]
• 3d090d2 fix histogram using ranges (#5636)
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Updates Zygote to 0.7.10

Release notes

Sourced from Zygote's releases.

v0.7.10

Zygote v0.7.10

Diff since v0.7.9

Merged pull requests:

• Add symmteric accum method for empty gradients (#1577) (@​DhairyaLGandhi)

Commits

• 6295734 Update Project.toml
• 92dab93 chore: add symmteric accum method for empty gradients (#1577)
• a50c429 Update Project.toml
• 6bab1f5 chore: handle when no grads are present (#1576)
• f5db395 Update Project.toml
• 48647d9 Accumulate mutable structs with Ref (#1574)
• 6dc5d2f Import typesof from Base instead of InteractiveUtils (#1569)
• 1b914d9 Update Project.toml
• e9cf749 chore: add unthunk_tangent rule for Ref (#1564)
• 042560f Remove DynamicPPL integration test (#1565)
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Updates DataFrames to 1.8.2

Release notes

Sourced from DataFrames's releases.

v1.8.2

DataFrames v1.8.2

Diff since v1.8.1

Merged pull requests:

• Bump actions/checkout from 5 to 6 (#3517) (@​dependabot[bot])
• Fix link for Data Wrangling with DataFrames.jl Cheat Sheet (#3519) (@​gwr-de)
• avoid Core.Box in the package (#3520) (@​KristofferC)
• Reject transformations on SubDataFrame with copycols=false (#3522) (@​arkgupta17)
• Add initial docs for output customization (#3523) (@​ronisbr)
• Fix wrong makeunique suggestion in stack error message (#3526) (@​anurag-mds)
• Bump codecov/codecov-action from 5 to 6 (#3527) (@​dependabot[bot])
• Bump julia-actions/cache from 2 to 3 (#3528) (@​dependabot[bot])
• Update test/io.jl (#3529) (@​bkamins)
• Prepare for 1.8.2 release (#3530) (@​bkamins)

Closed issues:

• stack wrong makeunique suggestion (#3487)
• invalid index with SubDataFrame and copycols = false (#3515)
• Link to "Data Wrangling with DataFrames.jl Cheat Sheet" is broken in the documentation (#3518)

Changelog

Sourced from DataFrames's changelog.

DataFrames.jl v1.8.2 Release Notes

Bug fixes

• Fix a column selection bug when transforming SubDataFrame with copycols=false (#3503)

DataFrames.jl v1.8.0 Release Notes

Ecosystem compatibility changes

• Make DataFrames.jl hashing consistent with Julia 1.13 and take into account column names when hashing AbstractDataFrame (#3507)
• Require Julia 1.10 and add PrettyTables.jl v3 support (#3510)

DataFrames.jl v1.7.1 Release Notes

Julia compatibility change

• Make DataFrames.jl support DataStructures.jl version 0.19 (#3503)

DataFrames.jl v1.7.0 Release Notes

New functionalities

• Allow passing multiple values to add in push!, pushfirst!, append!, and prepend! (#3372)
• rename and rename! now allow to apply a function transforming column names only to a subset of the columns specified by the cols keyword argument (#3380)
• mapcols and mapcols! now allow to apply a function transforming columns only to a subset of the columns specified by the cols keyword argument (#3386)

Bug fixes

• Correctly throw an error if negative number of rows is passed to first or last (#3402)
• Always use the default thread pool for multithreaded operations, instead of using the interactive thread pool when Julia was started with -tM,N with N > 0 (#3385)
• Correctly return Bool[] in the nonunique function applied to a data frame with a pulled column that has zero levels in the pool (#3393)

... (truncated)

Commits

• 946c72a Prepare for 1.8.2 release (#3530)
• dcb91ca Update test/io.jl (#3529)
• 435489f Bump codecov/codecov-action from 5 to 6 (#3527)
• 23dc025 Bump julia-actions/cache from 2 to 3 (#3528)
• feaaf37 Fix wrong makeunique suggestion in stack error message (#3526)
• b12f7fb Reject transformations on SubDataFrame with copycols=false + fix bug skipping...
• 6733162 Add initial docs for output customization (#3523)
• 9a5854f avoid Core.Box in the package (#3520)
• aeea2c2 Fix link for Data Wrangling with DataFrames.jl Cheat Sheet (#3519)
• 4ef3a3d Bump actions/checkout from 5 to 6 (#3517)
• Additional commits viewable in compare view

Updates FiniteDiff to 2.30.0

Commits

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Updates DelimitedFiles to 1.9.1

Commits

• db79c84 bump version
• 94336c1 Improve inference for DLMStore constructor (#24)
• See full diff in compare view

Updates ChainRulesTestUtils to 1.13.1

Commits

• 6038f79 Update Project.toml
• b0238a3 Merge pull request #293 from inkydragon/ci
• f7fc032 ci: use default arch
• 8ba30d2 ci: Update fix_doctests.yml
• 81c2f0a ci: Update JuliaNightly.yml
• 1b3f3e2 ci: Update Documenter.yml
• e7512ae Fix UndefVarError: eval_test_function not defined
• bdf69d5 Fix UndefVarError in @test_msg
• d702bc5 ci: update github actions
• c1913fa Fix some function names (#292)
• Additional commits viewable in compare view

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Superseded by #159.