Search results

Duplicated sequences in reference fasta

Status: Open.

#42 In SegataLab/panphlan;

· robbueck opened on Nov 29, 2024

I must merge the Pair-ends metagenomic data together, and then starting running the panphlan mapping.

Status: Open.

#41 In SegataLab/panphlan;

· allen-zhan340 opened on Jan 23, 2024

Problem with download reference genome from PanPhlAn pangenome database

Status: Open.

#40 In SegataLab/panphlan;

· shiangchiet opened on Nov 8, 2023

panphlan_clean_pangenome.py isn't installed as part of the package

Status: Open.

#39 In SegataLab/panphlan;

· sterrettJD opened on Apr 10, 2023

How to import roary pangenome results into panphlan?

Status: Open.

#38 In SegataLab/panphlan;

· yihandqx opened on Jan 6, 2023

Index for manual {species}_pangenome.tsv

Status: Open.

#37 In SegataLab/panphlan;

· Hocnonsense opened on Aug 10, 2022

Error running the sample a second time

Status: Open.

#35 In SegataLab/panphlan;

· namdeka opened on Dec 7, 2021

--func_annot

Status: Open.

#27 In SegataLab/panphlan;

· nick-youngblut opened on Feb 11, 2021

speed up panphlan_map.py with intervaltree?

Status: Open.

#26 In SegataLab/panphlan;

· nick-youngblut opened on Dec 20, 2020

Error running panphlan_map

Status: Open.

#20 In SegataLab/panphlan;

· sanpande opened on Dec 17, 2020

NameError: name 'randint' is not defined during panphlan_profiling.py

Status: Open.

#5 In SegataLab/panphlan;

· fconstancias opened on May 28, 2020