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Tablassert is a multipurpose tool that crafts knowledge assertions from tabular data, augments knowledge with configuration, and exports knowledge as Knowledge Graph Exchange (KGX) consistent TSVs.

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SkyeAv/Tablassert

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Tablassert

Version 4.2.1

By Skye Goetz and Gwênlyn Glusman

Tablassert is a versatile tool that creates knowledge assertions from tabular data, enhances knowledge with configurable options, and exports KGX-compliant TSVs.

Usage

Via Poetry

First, Install Poetry

python3 -m pip install poetry

Next, Install Tablassert and dependencies with Poetry

poetry install

Finally, Run the Tablassert CLI (documentation) with Poetry

poetry run cli --help

Via Docker

WIP: I'm Still Working on This

Via Kubernetes Deployment

WIP: I'm Still Working on This

Required Configuration

Documentation for GraphConfigs

Documentation for TableConfigs

Contact

Skye Lane Goetz, Gwênlyn Glusman - Institute for Systems Biology (ISB)

About

Tablassert is a multipurpose tool that crafts knowledge assertions from tabular data, augments knowledge with configuration, and exports knowledge as Knowledge Graph Exchange (KGX) consistent TSVs.

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