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@StamLab

Stamatoyannopoulos Lab

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  1. footprinting2012 footprinting2012 Public

    Forked from sjneph/footprinting2012

    DNaseI Footprinting

    C++ 4 1

  2. hotspot hotspot Public

    Forked from rthurman/hotspot

    Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

    Shell 2 2

  3. modwt modwt Public

    Forked from sjneph/modwt

    An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to overcome some problems with the usual d…

    C++ 1 2

  4. bcl_barcode_count bcl_barcode_count Public

    tally barcodes from Illumina sequencing machines

    Go 1 2

  5. bedops bedops Public

    Forked from bedops/bedops

    BEDOPS: high-performance genomic feature operations

    C

  6. network-motifs network-motifs Public

    Forked from sjneph/network-motifs

    network-motifs

    C++

Repositories

Showing 10 of 12 repositories
  • stampipes Public

    This is a focused collection of makefiles and scripts for analysis on Illumina sample data.

    Python 0 10 3 9 Updated Mar 23, 2025
  • bcl_barcode_count Public

    tally barcodes from Illumina sequencing machines

    Go 1 2 0 0 Updated Feb 28, 2021
  • picard-parser Public

    A parser for Picard output

    Python 0 2 0 0 Updated Apr 2, 2020
  • stampipes_test_data Public

    Holds test data for stampipes

    0 0 0 0 Updated Sep 10, 2018
  • modwt Public Forked from sjneph/modwt

    An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.

    C++ 1 7 0 0 Updated Jan 12, 2018
  • bedops Public Forked from bedops/bedops

    BEDOPS: high-performance genomic feature operations

    C 0 62 0 0 Updated Dec 28, 2017
  • hotspot Public Forked from rthurman/hotspot

    Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

    Shell 2 GPL-2.0 15 0 0 Updated May 12, 2017
  • hotspot2_deprecated Public

    A faster implementation of hotspot

    Shell 0 0 0 0 Updated Feb 9, 2016
  • network-motifs Public Forked from sjneph/network-motifs

    network-motifs

    C++ 0 GPL-2.0 1 0 0 Updated Aug 20, 2015
  • footprinting2012 Public Forked from sjneph/footprinting2012

    DNaseI Footprinting

    C++ 4 GPL-2.0 3 0 0 Updated Jun 12, 2015