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Add deprecation note & link to alternatives #118

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May 25, 2022
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Add deprecation note & link to alternatives #118

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11 changes: 9 additions & 2 deletions README.md
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# BacDiveR [![lifecycle](https://img.shields.io/badge/lifecycle-dormant-blue.svg)](https://www.tidyverse.org/lifecycle/#dormant) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1308060.svg)](https://zenodo.org/record/1308060) [![Travis build status](https://travis-ci.org/TIBHannover/BacDiveR.svg?branch=master)](https://travis-ci.org/TIBHannover/BacDiveR) [![CII Best Practices](https://bestpractices.coreinfrastructure.org/projects/2753/badge)](https://bestpractices.coreinfrastructure.org/projects/2753)
# BacDiveR [![lifecycle](https://lifecycle.r-lib.org/articles/figures/lifecycle-deprecated.svg)](https://www.tidyverse.org/lifecycle/#deprecated) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1308060.svg)](https://zenodo.org/record/1308060) [![Travis build status](https://travis-ci.org/TIBHannover/BacDiveR.svg?branch=master)](https://travis-ci.org/TIBHannover/BacDiveR) [![CII Best Practices](https://bestpractices.coreinfrastructure.org/projects/2753/badge)](https://bestpractices.coreinfrastructure.org/projects/2753)

This R package provides a programmatic interface to the [Bacterial Diversity Metadatabase][BD] of the [DSMZ (German Collection of Microorganisms and Cell Cultures)][DMSZ]. BacDiveR helps you improve your research on bacteria and archaea by providing access to "structured information on [...] their taxonomy, morphology, physiology, cultivation, geographic origin, application, interaction" and more ([Söhngen et al. 2016](https://academic.oup.com/nar/article/44/D1/D581/2503137)). Specifically, you can:
This R package provided a programmatic interface to the [Bacterial Diversity Metadatabase][BD] of the [DSMZ (German Collection of Microorganisms and Cell Cultures)][DMSZ].

As of [June 2021, BacDive's "redesign"](https://twitter.com/BacDive/status/1409481626367758341) has rendered this R package inoperable.
Apparently, they want you to use [either of these clients](https://api.bacdive.dsmz.de/client_examples).

# Old README below

BacDiveR helps you improve your research on bacteria and archaea by providing access to "structured information on [...] their taxonomy, morphology, physiology, cultivation, geographic origin, application, interaction" and more ([Söhngen et al. 2016](https://academic.oup.com/nar/article/44/D1/D581/2503137)). Specifically, you can:

- download the BacDive data you need for offline investigation, and

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