Skip to content

Issues: TranslatorSRI/Babel

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

218 Open 83 Closed
218 Open 83 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Use Symbol_from_nomenclature_authority instead of Symbol as the primary label of NCBIGene identifiers Work needed: low
#429 opened Mar 27, 2025 by gaurav
2 tasks
Babel March 2025
2
NCBI Priority: High
#428 opened Mar 20, 2025 by gaurav Babel March 2025
Do we want gene groups in Babel?
#427 opened Mar 17, 2025 by gaurav Not urgent
Extend duplicate_curies.tsv to include duplicate CURIE leaders
#423 opened Mar 10, 2025 by gaurav Babel March 2025
1
Should we include NCIT in Proteins?
#422 opened Mar 7, 2025 by gaurav
Some UMLS types are not mapped to Biolink types
#421 opened Mar 6, 2025 by gaurav Babel March 2025
Track down why we have the discrepancy between CURIE report and the Redis database Priority: Low
#417 opened Feb 26, 2025 by gaurav Issues needing investigation
Babel as a downloadable Python package
#416 opened Feb 21, 2025 by gaurav Needed soon
Use RxCUI active ingredient information to merge cliques Priority: High
#415 opened Feb 21, 2025 by gaurav
Add "Shannon alpha diversity"
#414 opened Feb 20, 2025 by gaurav
3 tasks
Remove hack now that UMLS has been added to biolink:BiologicalProcess
#413 opened Feb 20, 2025 by gaurav Babel March 2025
UMLS identifiers don't have the right type Biolink classification issue Data Source: UMLS and RxNorm issue of issues A high-level issue that collects individual issues that might have similar causes
#410 opened Feb 6, 2025 by gaurav Babel March 2025
Improve preferred label for chemical cliques
#409 opened Jan 30, 2025 by gaurav
Improve preferred labels
#408 opened Jan 30, 2025 by gaurav Needed soon
Some confusion over Orphanet identifiers in EFO Priority: High
#403 opened Jan 22, 2025 by gaurav Babel March 2025
Are we correctly determining the type for PubChem identifiers that don't have one? Quick task
#401 opened Jan 21, 2025 by gaurav Babel March 2025
@gaurav
Improve the process of running Babel Priority: Medium
#400 opened Jan 21, 2025 by gaurav Needed soon
NCBIGene sometimes has an unreported download issue Priority: High
#398 opened Jan 21, 2025 by gaurav Babel March 2025
@gaurav
1
UMLS Phenotypes (that aren't phenotypes) Data Source: UMLS and RxNorm
#394 opened Jan 8, 2025 by cbizon Issues needing investigation
1
Neutrophils biolink:AnatomicalEntity biolink:Cell Data Source: UMLS and RxNorm split clique
#393 opened Jan 8, 2025 by cbizon Needs tests
1
UMLS/MESH for hydrogels: How to handle type mismatches? biolink:ChemicalEntity biolink:Device Data Source: MeSH Data Source: UMLS and RxNorm split clique
#392 opened Jan 8, 2025 by cbizon Issues needing investigation
UMLS/EFO Data Source: EFO Data Source: UMLS and RxNorm
#391 opened Jan 8, 2025 by cbizon Needs tests
UMLS and roles biolink:ChemicalEntity Data Source: ChEBI Data Source: UMLS and RxNorm
#390 opened Jan 7, 2025 by cbizon Issues needing investigation
1
GO/UMLS Data Source: UMLS and RxNorm New mappings
#389 opened Jan 7, 2025 by cbizon
UMLS/NCBITaxon? Data Source: NCBITaxon Data Source: UMLS and RxNorm
#388 opened Jan 7, 2025 by cbizon Issues needing investigation
ProTip! Add no:assignee to see everything that’s not assigned.