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remove params references from prs subworkflow - #17

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Jorisvansteenbrugge merged 12 commits into
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feature/prs_input_fix
Aug 26, 2026
Merged

remove params references from prs subworkflow#17
Jorisvansteenbrugge merged 12 commits into
mainfrom
feature/prs_input_fix

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@Jorisvansteenbrugge

@Jorisvansteenbrugge Jorisvansteenbrugge commented Aug 14, 2026

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subworkflow bam_prs still contained params references, which makes it difficult to run the workflow in different pipelines. Those references are removed now and replaced by inputs.

In addition, I've created a subworkflow that prepares the necessary files from the ICA genome tar

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Looks good, some small changes/questions.

Comment thread modules/UMCUGenetics/untar/genome/main.nf
Comment thread subworkflows/UMCUGenetics/bam_prs/main.nf Outdated
Comment thread subworkflows/UMCUGenetics/bam_prs/tests/main.nf.test Outdated

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All comments are addressed.

@Jorisvansteenbrugge
Jorisvansteenbrugge merged commit fa1b95b into main Aug 26, 2026
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@Jorisvansteenbrugge
Jorisvansteenbrugge deleted the feature/prs_input_fix branch August 26, 2026 06:53
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2 participants