remove params references from prs subworkflow - #17
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…dules into feature/prs_input_fix
ALuesink
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Aug 25, 2026
ALuesink
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Looks good, some small changes/questions.
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subworkflow bam_prs still contained
paramsreferences, which makes it difficult to run the workflow in different pipelines. Those references are removed now and replaced by inputs.In addition, I've created a subworkflow that prepares the necessary files from the ICA genome tar