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prs utils scripts - #1

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Jorisvansteenbrugge merged 1 commit into
mainfrom
feature/prs_utils
Aug 5, 2026
Merged

prs utils scripts#1
Jorisvansteenbrugge merged 1 commit into
mainfrom
feature/prs_utils

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@Jorisvansteenbrugge

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the scripts in here were already reviewed as part of DxNextflowpRS, they are moved here to organise the related stand-alone scripts into a bundled package

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github-actions Bot commented Aug 5, 2026

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Coverage

Coverage Report
FileStmtsMissCoverMissing
src/prs_utils
   __init__.py00100% 
   cli.py27485%50, 59, 77, 88
   get_snp_list.py30293%19, 50
   merge_prs_mqc.py42198%75
   normalise_counts.py19195%33
   pgs_to_vcf.py95397%52–53, 134
   sample_qc.py42198%157
TOTAL2551295% 

Tests Skipped Failures Errors Time
23 0 💤 0 ❌ 0 🔥 2.787s ⏱️

@Jorisvansteenbrugge
Jorisvansteenbrugge merged commit 3660a68 into main Aug 5, 2026
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